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Seq-SetNet: directly exploiting multiple sequence alignment for protein secondary structure prediction
期刊论文
BIOINFORMATICS, 2022, 卷号: 38, 期号: 4, 页码: 990-996
作者:
Ju, Fusong
;
Zhu, Jianwei
;
Zhang, Qi
;
Wei, Guozheng
;
Sun, Shiwei
收藏
  |  
浏览/下载:11/0
  |  
提交时间:2023/01/16
RECOGNITION
FRAGMENTS
FOLD
A deep learning-based method for drug-target interaction prediction based on long short-term memory neural network
期刊论文
BMC MEDICAL INFORMATICS AND DECISION MAKING, 2020, 卷号: 20, 期号: 1, 页码: 1-9
作者:
Wang, YB (Wang, Yan-Bin)[ 1,2 ]
;
You, ZH (You, Zhu-Hong)[ 1 ]
;
Yang, S (Yang, Shan)[ 1 ]
;
Yi, HC (Yi, Hai-Cheng)[ 1,2 ]
;
Chen, ZH (Chen, Zhan-Heng)[ 1,2 ]
收藏
  |  
浏览/下载:30/0
  |  
提交时间:2020/04/21
Drug-target
Deep learning
Legendre moment
Long short-term memory
Incorporating chemical sub-structures and protein evolutionary information for inferring drug-target interactions
期刊论文
SCIENTIFIC REPORTS, 2020, 卷号: 10, 期号: 1, 页码: 1-11
作者:
Wang, L (Wang, Lei)[ 1,2 ]
;
You, ZH (You, Zhu-Hong)[ 2 ]
;
Li, LP (Li, Li-Ping)[ 2 ]
;
Yan, X (Yan, Xin)[ 3 ]
;
Zhang, W (Zhang, Wei)[ 1 ]
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  |  
浏览/下载:25/0
  |  
提交时间:2020/12/09
NLPEI: A Novel Self-Interacting Protein Prediction Model Based on Natural Language Processing and Evolutionary Information
期刊论文
EVOLUTIONARY BIOINFORMATICS, 2020, 卷号: 16, 期号: 12, 页码: 1-12
作者:
Jia, LN (Jia, Li-Na)[ 1 ]
;
Yan, X (Yan, Xin)[ 2,3 ]
;
You, ZH (You, Zhu-Hong)[ 4 ]
;
Zhou, X (Zhou, Xi)[ 4 ]
;
Li, LP (Li, Li-Ping)[ 4 ]
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  |  
浏览/下载:27/0
  |  
提交时间:2021/03/19
Self-interacting protein
natural language processing
evolutionary information
stacked auto-encoder
A deep learning method to more accurately recall known lysine acetylation sites
期刊论文
BMC BIOINFORMATICS, 2019, 卷号: 20, 页码: 11
作者:
Wu, Meiqi
;
Yang, Yingxi
;
Wang, Hui
;
Xu, Yan
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  |  
浏览/下载:54/0
  |  
提交时间:2019/04/03
Lysine acetylation
PTMs
Deep learning
An Improved Deep Forest Model for Predicting Self-Interacting Proteins From Protein Sequence Using Wavelet Transformation
期刊论文
FRONTIERS IN GENETICS, 2019, 卷号: 10, 期号: 3, 页码: 1-10
作者:
Chen, ZH (Chen, Zhan-Heng)[ 1,2 ]
;
Li, LP (Li, Li-Ping)[ 1 ]
;
He, Z (He, Zhou)[ 3 ]
;
Zhou, JR (Zhou, Ji-Ren)[ 1 ]
;
Li, YM (Li, Yangming)[ 4 ]
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  |  
浏览/下载:62/0
  |  
提交时间:2019/03/19
self-interacting proteins
disease
position-specific scoring matrix
deep learning
wavelet transform
Prediction of Self-Interacting Proteins from Protein Sequence Information Based on Random Projection Model and Fast Fourier Transform
期刊论文
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2019, 卷号: 20, 期号: 4, 页码: 1-15
作者:
Chen, ZH (Chen, Zhan-Heng)[ 1,2 ]
;
You, ZH (You, Zhu-Hong)[ 1,2 ]
;
Li, LP (Li, Li-Ping)[ 1 ]
;
Wang, YB (Wang, Yan-Bin)[ 1 ]
;
Wong, L (Wong, Leon)[ 1,2 ]
收藏
  |  
浏览/下载:52/0
  |  
提交时间:2019/05/16
self-interacting proteins
position-specific scoring matrix
fast Fourier transform
random projection
BGFE: A Deep Learning Model for ncRNA-Protein Interaction Predictions Based on Improved Sequence Information
期刊论文
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2019, 卷号: 20, 期号: 4, 页码: 1-14
作者:
Zhan, ZH (Zhan, Zhao-Hui)[ 1 ]
;
Jia, LN (Jia, Li-Na)[ 2 ]
;
Zhou, Y (Zhou, Yong)[ 1 ]
;
Li, LP (Li, Li-Ping)[ 3 ]
;
Yi, HC (Yi, Hai-Cheng)[ 3 ]
收藏
  |  
浏览/下载:76/0
  |  
提交时间:2019/05/16
ncRNA-protein interaction
bi-gram
position specific scoring matrix
k-mers
deep learning
Improved Prediction of Protein-Protein Interactions Using Descriptors Derived From PSSM via Gray Level Co-Occurrence Matrix
期刊论文
IEEE ACCESS, 2019, 卷号: 7, 期号: 4, 页码: 49456-49465
作者:
Zhu, HJ (Zhu, Hui-Juan)[ 1 ]
;
You, ZH (You, Zhu-Hong)[ 2,3 ]
;
Shi, WL (Shi, Wei-Lei)[ 2 ]
;
Xu, SK (Xu, Shou-Kun)[ 4 ]
;
Jiang, TH (Jiang, Tong-Hai)[ 2,3 ]
收藏
  |  
浏览/下载:108/0
  |  
提交时间:2019/05/16
Protein-protein interactions
rotation forest
position-specific scoring matrix
gray level co-occurrence matrix
Sequence-based Prediction of Protein-Protein Interactions Using Gray Wolf Optimizer-Based Relevance Vector Machine
期刊论文
EVOLUTIONARY BIOINFORMATICS, 2019, 卷号: 15, 期号: 5, 页码: 1-10
作者:
An, JY (An, Ji-Yong)[ 1,2 ]
;
You, ZH (You, Zhu-Hong)[ 3 ]
;
Zhou, Y (Zhou, Yong)[ 1,2 ]
;
Wang, DF (Wang, Da-Fu)[ 1,2 ]
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  |  
浏览/下载:46/0
  |  
提交时间:2019/06/28
RVM
gray wolf optimizer
BIG
PSSM
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