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期刊论文 [26]
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ScLSTM: single-cell type detection by siamese recurrent network and hierarchical clustering
期刊论文
BMC BIOINFORMATICS, 2023, 卷号: 24, 期号: 1, 页码: 15
作者:
Jiang, Hanjing
;
Huang, Yabing
;
Li, Qianpeng
;
Feng, Boyuan
收藏
  |  
浏览/下载:1/0
  |  
提交时间:2023/12/21
Single-cell
ScRNA-seq
Siamese LSTM
Cell type detection
Metabolic-related gene pairs signature analysis identifies ABCA1 expression levels on tumor-associated macrophages as a prognostic biomarker in primary IDHWT glioblastoma
期刊论文
FRONTIERS IN IMMUNOLOGY, 2022, 卷号: 13
作者:
Wang, Shiqun
;
Li, Lu
;
Zuo, Shuguang
;
Kong, Lingkai
;
Wei, Jiwu
收藏
  |  
浏览/下载:8/0
  |  
提交时间:2022/12/22
primary glioblastoma
wild-type isocitrate dehydrogenase
metabolic-related gene pairs
prognosis
tumor-associated macrophages
ABCA1
Single-Cell Transcriptome Analysis of Radiation Pneumonitis Mice
期刊论文
ANTIOXIDANTS, 2022, 卷号: 11
作者:
Yang, Miaomiao
;
Fan, Qiang
;
Hei, Tom K.
;
Chen, Guodong
;
Cao, Wei
收藏
  |  
浏览/下载:15/0
  |  
提交时间:2022/12/23
radiation pneumonitis (RP)
single-cell RNA-seq (scRNA-seq)
mouse
oxidative stress
Deciphering the Spatial Modular Patterns of Tissues by Integrating Spatial and Single-Cell Transcriptomic Data
期刊论文
JOURNAL OF COMPUTATIONAL BIOLOGY, 2022, 页码: 14
作者:
Shan, Xu
;
Chen, Jinyu
;
Dong, Kangning
;
Zhou, Wei
;
Zhang, Shihua
收藏
  |  
浏览/下载:7/0
  |  
提交时间:2023/02/07
data integration
single-cell transcriptomics
spatial modular patterns
spatial transcriptomics
Spectral clustering of single cells using Siamese nerual network combined with improved affinity matrix
期刊论文
BRIEFINGS IN BIOINFORMATICS, 2022, 页码: 12
作者:
Jiang, Hanjing
;
Huang, Yabing
;
Li, Qianpeng
收藏
  |  
浏览/下载:15/0
  |  
提交时间:2022/06/10
scRNA-seq
Sigmoid kernel
Siamese CNN
improved spectral clustering
Network-based integrative analysis of single-cell transcriptomic and epigenomic data for cell types
期刊论文
BRIEFINGS IN BIOINFORMATICS, 2022, 卷号: 23, 期号: 2, 页码: 13
作者:
Wu, Wenming
;
Zhang, Wensheng
;
Ma, Xiaoke
收藏
  |  
浏览/下载:30/0
  |  
提交时间:2022/07/25
single-cell multi-omics data
integrative analysis
adaptive graph learning
cell type
hDirect-MAP: projection-free single-cell modeling of response to checkpoint immunotherapy
期刊论文
BRIEFINGS IN BIOINFORMATICS, 2022, 卷号: 23, 期号: 2, 页码: 16
作者:
Lu, Yong
;
Xue, Gang
;
Zheng, Ningbo
;
Han, Kun
;
Yang, Wenzhong
收藏
  |  
浏览/下载:9/0
  |  
提交时间:2023/02/07
single-cell RNA sequencing (scRNA-seq)
single-cell mass cytometry (CyTOF)
Pareto optimization
projection-free single-cell modeling
response to immune checkpoint blockade
Highly Sensitive and Specific Responses of Oyster Hemocytes to Copper Exposure: Single-Cell Transcriptomic Analysis of Different Cell Populations
期刊论文
ENVIRONMENTAL SCIENCE & TECHNOLOGY, 2022, 卷号: 56, 期号: 4, 页码: 2497-2510
作者:
Meng, Jie
;
Wang, Wen-Xiong
收藏
  |  
浏览/下载:40/0
  |  
提交时间:2022/07/15
oyster
Cu exposure
scRNA-seq
granulocytes
heterogeneity responses
Functional heterogeneity of immune defenses in molluscan oysters Crassostrea hongkongensis revealed by high-throughput single-cell transcriptome
期刊论文
FISH & SHELLFISH IMMUNOLOGY, 2022, 卷号: 120, 页码: 202-213
作者:
Meng, Jie
;
Zhang, Guofan
;
Wang, Wen-Xiong
收藏
  |  
浏览/下载:57/0
  |  
提交时间:2022/01/05
Oyster
scRNA-seq
Granulocytes
Hematopoietic factor
Pseudo-temporal ordering
An Efficient and Universal Protoplast Isolation Protocol Suitable for Transient Gene Expression Analysis and Single-Cell RNA Sequencing
期刊论文
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2022, 卷号: 23, 期号: 7
作者:
Wang, Juanjuan
;
Wang, Yang
;
Lu, Tianfeng
;
Yang, Xia
;
Liu, Jing
收藏
  |  
浏览/下载:0/0
  |  
提交时间:2024/03/07
protoplast isolation
cell walls
Chirita pumila
protocol
transient gene expression
single-cell RNA sequencing
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