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学科主题:Biochemistry & Molecular Biology
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ISSEC: inferring contacts among protein secondary structure elements using deep object detection
期刊论文
BMC BIOINFORMATICS, 2020, 卷号: 21, 期号: 1, 页码: 503
作者:
Zhang, Qi
;
Zhu, Jianwei
;
Ju, Fusong
;
Kong, Lupeng
;
Sun, Shiwei
收藏
  |  
浏览/下载:49/0
  |  
提交时间:2021/09/27
HELIX-HELIX INTERACTIONS
INVERSE COVARIANCE ESTIMATION
RESIDUE CONTACTS
BETA-SHEETS
PREDICTION
MEMBRANE
DCA for genome-wide epistasis analysis: the statistical genetics perspective
期刊论文
PHYSICAL BIOLOGY, 2019, 卷号: 16, 期号: 2, 页码: 26002
作者:
Gao, CY
;
Cecconi, F
;
Vulpiani, A
;
Zhou, HJ
;
Aurell, E
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  |  
浏览/下载:73/0
  |  
提交时间:2019/07/19
DIRECT-COUPLING ANALYSIS
PROTEIN-STRUCTURE
CONTACTS
HIV
IDENTIFICATION
RECOMBINATION
LINKAGE
LANDSCAPE
INFERENCE
MODEL
DCA for genome-wide epistasis analysis: the statistical genetics perspective
期刊论文
PHYSICAL BIOLOGY, 2019, 卷号: 16, 期号: 2, 页码: 26002
作者:
Gao, Chen-Yi
;
Cecconi, Fabio
;
Vulpiani, Angelo
;
Zhou, Hai-Jun
;
Aurell, Erik
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  |  
浏览/下载:56/0
  |  
提交时间:2020/11/26
DIRECT-COUPLING ANALYSIS
PROTEIN-STRUCTURE
CONTACTS
HIV
IDENTIFICATION
RECOMBINATION
LINKAGE
LANDSCAPE
INFERENCE
MODEL
Predicting protein inter-residue contacts using composite likelihood maximization and deep learning
期刊论文
BMC BIOINFORMATICS, 2019, 卷号: 20, 期号: 1, 页码: 537
作者:
Zhang, Haicang
;
Zhang, Qi
;
Ju, Fusong
;
Zhu, Jianwei
;
Gao, Yujuan
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  |  
浏览/下载:4/0
  |  
提交时间:2020/06/16
COUPLING ANALYSIS
SEQUENCE
EVOLUTIONARY
INFORMATION
NETWORKS
RANK
Correction to: Predicting protein inter-residue contacts using composite likelihood maximization and deep learning (vol 20, 537, 2019)
期刊论文
BMC BIOINFORMATICS, 2019, 卷号: 20, 期号: 1, 页码: 616
作者:
Zhang, Haicang
;
Zhang, Qi
;
Ju, Fusong
;
Zhu, Jianwei
;
Gao, Yujuan
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  |  
浏览/下载:3/0
  |  
提交时间:2020/06/16
Template-based and free modeling of I-TASSER and QUARK pipelines using predicted contact maps in CASP12
期刊论文
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2018, 卷号: 86, 页码: 136-151
作者:
Wang, YT
;
Zhang, CX
;
Mortuza, SM
;
He, BJ
;
Zhang, Y
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  |  
浏览/下载:88/0
  |  
提交时间:2018/12/27
PROTEIN-STRUCTURE PREDICTION
RESIDUE CONTACTS
SEQUENCE
ALIGNMENTS
ACCURACY
NETWORKS
ROLL
Molecular dynamics simulation study of the "stay or leave" problem for two magnesium ions in gene transcription
期刊论文
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2017, 卷号: 85, 期号: 6, 页码: 1002-1007
作者:
Wu, SG
;
Wu, SG (reprint author), Sichuan Normal Univ, Coll Chem & Mat Sci, Chengdu 610066, Peoples R China.
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  |  
浏览/下载:21/0
  |  
提交时间:2017/12/21
Molecular Dynamics Simulation
T7 Rna Polymerase
Magnesium Ion
Transcription Mechanism
Free Energy
Improving protein fold recognition by extracting fold-specific features from predicted residue-residue contacts
期刊论文
BIOINFORMATICS, 2017, 卷号: 33, 期号: 23, 页码: 3749-3757
作者:
Zhu, JW
;
Zhang, HC
;
Li, SC
;
Wang, C
;
Kong, LP
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  |  
浏览/下载:75/0
  |  
提交时间:2017/12/21
Improving residue-residue contact prediction via low-rank and sparse decomposition of residue correlation matrix
期刊论文
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 2016, 卷号: 472, 期号: 1, 页码: 217-222
作者:
Zhang, HC
;
Gao, YJ
;
Deng, MH
;
Wang, C
;
Zhu, JW
收藏
  |  
浏览/下载:14/0
  |  
提交时间:2019/04/08
Protein contacts prediction
MULTIPLE SEQUENCE ALIGNMENTS
Correlation analysis
COEVOLUTION
Background correlation removal
MUTATIONS
Low-rank and sparse matrix decomposition
PROTEINS
EVOLUTIONARY
INFORMATION
COVARIANCE
SEARCH
Improving residue-residue contact prediction via low-rank and sparse decomposition of residue correlation matrix
期刊论文
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 2016, 卷号: 472, 期号: 1, 页码: 217-222
作者:
Bu, DB
;
Zheng, WM
;
Zheng, WM (reprint author), Chinese Acad Sci, Inst Theoret Phys, Beijing 100080, Peoples R China.
;
Bu, DB (reprint author), Chinese Acad Sci, Inst Comp Technol, Key Lab Intelligent Informat Proc, Beijing, Peoples R China.
;
Zhang, HC
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  |  
浏览/下载:37/0
  |  
提交时间:2017/10/13
Protein Contacts Prediction
Correlation Analysis
Background Correlation Removal
Low-rank And Sparse Matrix Decomposition
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