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科研机构
上海药物研究所 [18]
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期刊论文 [18]
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2021 [3]
2020 [2]
2019 [1]
2018 [1]
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2013 [1]
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Picture-word order compound protein interaction: Predicting compound-protein interaction using structural images of compounds
期刊论文
JOURNAL OF COMPUTATIONAL CHEMISTRY, 2021, 页码: 10
作者:
Qian, Ying
;
Li, Xuelian
;
Wu, Jian
;
Zhou, Aimin
;
Xu, Zhijian
收藏
  |  
浏览/下载:23/0
  |  
提交时间:2022/01/04
compound-protein interaction
convolutional neural network (CNN)
drug-drug interaction
image processing
structural images
Discovery of Novel Allosteric Modulators Targeting an Extra-Helical Binding Site of GLP-1R Using Structure- and Ligand-Based Virtual Screening
期刊论文
BIOMOLECULES, 2021, 卷号: 11, 期号: 7, 页码: 14
作者:
Zhou, Qingtong
;
Guo, Wanjing
;
Dai, Antao
;
Cai, Xiaoqing
;
Vass, Marton
收藏
  |  
浏览/下载:41/0
  |  
提交时间:2021/08/17
GLP-1R
virtual screening
allosteric modulator
drug discovery
molecular docking
Molecular Dynamics Simulations Reveal the Modulated Mechanism of STING Conformation
期刊论文
INTERDISCIPLINARY SCIENCES-COMPUTATIONAL LIFE SCIENCES, 2021, 页码: 15
作者:
Chen, Li
;
Zhao, Shuang
;
Zhu, Yanyan
;
Liu, Yongsheng
;
Li, Huiyu
收藏
  |  
浏览/下载:26/0
  |  
提交时间:2021/08/17
STING
Small molecule
Binding site
Modulated mechanism
Molecular dynamics simulation
pi-pi stacking interaction
TransformerCPI: improving compound-protein interaction prediction by sequence-based deep learning with self-attention mechanism and label reversal experiments
期刊论文
BIOINFORMATICS, 2020, 卷号: 36, 期号: 16, 页码: 4406-4414
作者:
Chen, Lifan
;
Tan, Xiaoqin
;
Wang, Dingyan
;
Zhong, Feisheng
;
Liu, Xiaohong
收藏
  |  
浏览/下载:17/0
  |  
提交时间:2021/05/24
Revisiting Aldehyde Oxidase Mediated Metabolism in Drug-like Molecules: An Improved Computational Model
期刊论文
JOURNAL OF MEDICINAL CHEMISTRY, 2020, 卷号: 63, 期号: 12, 页码: 6523-6537
作者:
Zhao, Jihui
;
Cui, Rongrong
;
Wang, Lihao
;
Chen, Yingjia
;
Fu, Zunyun
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  |  
浏览/下载:25/0
  |  
提交时间:2020/12/24
CHARMM-GUI DEER facilitator for spin-pair distance distribution calculations and preparation of restrained-ensemble molecular dynamics simulations
期刊论文
JOURNAL OF COMPUTATIONAL CHEMISTRY, 2019, 页码: 6
作者:
Qi, Yifei
;
Lee, Jumin
;
Cheng, Xi
;
Shen, Rong
;
Islam, Shahidul M.
收藏
  |  
浏览/下载:16/0
  |  
提交时间:2020/07/01
MDDS simulation
reMD simulation
spin label
EPR
DEER
CHARMM-GUI
Absorption Characteristics of Combination Medication of Realgar and : Transport across MDCK-MDR1 Cells and Pharmacokinetics in Mice after Oral Administration
期刊论文
Evidence-based complementary and alternative medicine : eCAM, 2018, 卷号: 2018, 页码: 6493630
作者:
Zhang, Miao
;
Guo, Lin
;
Lin, Long-Fei
;
Qu, Chang-Hai
;
Yin, Xing-Bin
收藏
  |  
浏览/下载:20/0
  |  
提交时间:2019/01/08
How Well Can Implicit Solvent Simulations Explore Folding Pathways? A Quantitative Analysis of alpha-Helix Bundle Proteins
期刊论文
JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2017, 卷号: 13, 期号: 12, 页码: 6177-6190
作者:
Shao, Qiang
;
Zhu, Weiliang
收藏
  |  
浏览/下载:11/0
  |  
提交时间:2019/01/08
Quantitative proteomic Analysis Reveals up-regulation of caveolin-1 in FOXP3-overexpressed human gastric cancer cells
期刊论文
SCIENTIFIC REPORTS, 2017, 卷号: 7
作者:
Pan, Duyi
;
Gao, Jing
;
Zeng, Xiaoqing
;
Ma, Guifen
;
Li, Na
收藏
  |  
浏览/下载:26/0
  |  
提交时间:2019/01/08
Computational Models for Predicting Interactions with Membrane Transporters
期刊论文
CURRENT MEDICINAL CHEMISTRY, 2013, 卷号: 20, 期号: 16, 页码: 2118-2136
作者:
Xu, Y.
;
Shen, Q.
;
Liu, X.
;
Lu, J.
;
Li, S.
收藏
  |  
浏览/下载:14/0
  |  
提交时间:2019/01/08
Computational methods
homology modeling
membrane transporter
phamacophore models
QSAR models
supervised/unsupervised learning algorithms
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