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西北高原生物研究所 [29]
上海大学 [16]
复旦大学上海医学院 [14]
上海药物研究所 [11]
北京大学 [10]
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High-throughput prediction and characterization of antimicrobial peptides from multi-omics datasets of Chinese tubular cone snail (Conus betulinus)
期刊论文
FRONTIERS IN MARINE SCIENCE, 2022, 卷号: 9, 页码: 13
作者:
Li, Ruihan
;
Huang, Yu
;
Peng, Chao
;
Gao, Zijian
;
Liu, Jie
收藏
  |  
浏览/下载:3/0
  |  
提交时间:2023/12/13
Conus betulinus
antimicrobial peptide
multi-omics
in silico prediction
in vitro assessment
Unveiling the occurrence, hosts and mobility potential of antibiotic resistance genes in the deep ocean
期刊论文
SCIENCE OF THE TOTAL ENVIRONMENT, 2022, 卷号: 816, 页码: 11
作者:
Zhang, Haikun
;
Wang, Yibo
;
Liu, Pengyuan
;
Sun, Yanyu
;
Dong, Xiyang
收藏
  |  
浏览/下载:20/0
  |  
提交时间:2022/08/13
Antibiotic resistance genes
Distribution
Microbial host
Mobility potential
Deep-sea waters
pDeepXL: MS/MS Spectrum Prediction for Cross-Linked Peptide Pairs by Deep Learning
期刊论文
JOURNAL OF PROTEOME RESEARCH, 2021, 卷号: 20, 期号: 5, 页码: 2570-2582
作者:
Chen, Zhen-Lin
;
Mao, Peng-Zhi
;
Zeng, Wen-Feng
;
Chi, Hao
;
He, Si-Min
收藏
  |  
浏览/下载:12/0
  |  
提交时间:2021/12/01
cross-linking mass spectrometry
spectrum prediction
deep learning
transfer learning
online fine-tuning
DeepDigest: Prediction of Protein Proteolytic Digestion with Deep Learning
期刊论文
ANALYTICAL CHEMISTRY, 2021, 卷号: 93, 期号: 15, 页码: 6094-6103
作者:
Yang, Jinghan
;
Gao, Zhiqiang
;
Ren, Xiuhan
;
Sheng, Jie
;
Xu, Ping
收藏
  |  
浏览/下载:11/0
  |  
提交时间:2021/10/26
Genomic Characterization of a Novel Tenericutes Bacterium from Deep-Sea Holothurian Intestine
期刊论文
MICROORGANISMS, 2020, 卷号: 8, 期号: 12, 页码: 16
作者:
Zhu, Fang-Chao
;
Lian, Chun-Ang
;
He, Li-Sheng
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  |  
浏览/下载:20/0
  |  
提交时间:2021/03/23
deep-sea
holothurian
gut
symbiont
CRISPR
Tenericutes
Deep Learning in Proteomics
期刊论文
PROTEOMICS, 2020, 页码: 21
作者:
Wen, Bo
;
Zeng, Wen-Feng
;
Liao, Yuxing
;
Shi, Zhiao
;
Savage, Sara R.
收藏
  |  
浏览/下载:23/0
  |  
提交时间:2021/12/01
bioinformatics
deep learning
proteomics
MSpectraAI: a powerful platform for deciphering proteome profiling of multi-tumor mass spectrometry data by using deep neural networks
期刊论文
BMC BIOINFORMATICS, 2020, 卷号: 21, 期号: 1, 页码: 15
作者:
Wang, Shisheng
;
Zhu, Hongwen
;
Zhou, Hu
;
Cheng, Jingqiu
;
Yang, Hao
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  |  
浏览/下载:55/0
  |  
提交时间:2020/12/24
Raw mass spectrometry data
Proteome profiling
Feature swath extraction
Deep neural networks
Multi-tumor types
Leave-one-out cross prediction strategy
PredictFP2: A New Computational Model to Predict Fusion Peptide Domain in All Retroviruses
期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2020, 卷号: 17, 期号: 5, 页码: 1714-1720
作者:
Wu, Sijia
;
Wu, Xiaoming
;
Tian, Jie
;
Zhou, Xiaobo
;
Huang, Liyu
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  |  
浏览/下载:64/0
  |  
提交时间:2021/01/07
Benchmark testing
Amino acids
Support vector machines
Computational modeling
Predictive models
Cells (biology)
Databases
Fusion peptide prediction
FP distribution
hydrophobicity
retrovirus
support vector machine
Multiscale computational prediction of beta-sheet peptide self-assembly morphology
期刊论文
MOLECULAR SIMULATION, 2020, 页码: 暂无
作者:
Deng, Li
;
Wang, Yanting
收藏
  |  
浏览/下载:3/0
  |  
提交时间:2020/06/16
MOLECULAR-DYNAMICS METHOD
INTERMOLECULAR FORCES
PROTEIN AGGREGATION
NANOMECHANICS
POLYMORPHISM
SIMULATIONS
TRANSITIONS
NANOTUBES
FIBRILS
SOLVENT
Genome-wide transcriptome and proteome profiles indicate an active role of alternative splicing during de-etiolation of maize seedlings
期刊论文
PLANTA, 2020, 卷号: 252, 期号: 4
作者:
Yan, Zhen
;
Shen, Zhuo
;
Li, Zhe
;
Chao, Qing
;
Kong, Lei
收藏
  |  
浏览/下载:32/0
  |  
提交时间:2022/03/01
Alternative splicing
De-etiolation
Maize seedlings
Proteome
Transcriptome
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