Comparative Transcriptomic Characterization of the Early Development in Pacific White Shrimp Litopenaeus vannamei

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	Comparative Transcriptomic Characterization of the Early Development in Pacific White Shrimp Litopenaeus vannamei
	Wei, Jiankai1,2 ; Zhang, Xiaojun 1; Yu, Yang1,2 ; Huang, Hao 3; Li, Fuhua 1; Xiang, Jianhai1
刊名	PLOS ONE
	2014-09-08
卷号	9 期号:9 页码:e106201
通讯作者	Xiang, JH (reprint author), Chinese Acad Sci, Inst Oceanol, Key Lab Expt Marine Biol, Qingdao, Peoples R China.
英文摘要	Penaeid shrimp has a distinctive metamorphosis stage during early development. Although morphological and biochemical studies about this ontogeny have been developed for decades, researches on gene expression level are still scarce. In this study, we have investigated the transcriptomes of five continuous developmental stages in Pacific white shrimp (Litopenaeus vannamei) with high throughput Illumina sequencing technology. The reads were assembled and clustered into 66,815 unigenes, of which 32,398 have putative homologues in nr database, 14,981 have been classified into diverse functional categories by Gene Ontology (GO) annotation and 26,257 have been associated with 255 pathways by KEGG pathway mapping. Meanwhile, the differentially expressed genes (DEGs) between adjacent developmental stages were identified and gene expression patterns were clustered. By GO term enrichment analysis, KEGG pathway enrichment analysis and functional gene profiling, the physiological changes during shrimp metamorphosis could be better understood, especially histogenesis, diet transition, muscle development and exoskeleton reconstruction. In conclusion, this is the first study that characterized the integrated transcriptomic profiles during early development of penaeid shrimp, and these findings will serve as significant references for shrimp developmental biology and aquaculture research.
学科主题	Science & Technology - Other Topics
收录类别	SCI
语种	英语
WOS记录号	WOS:000341304700025
内容类型	期刊论文
源URL	[http://ir.qdio.ac.cn/handle/337002/24093]
专题	海洋研究所_实验海洋生物学重点实验室
作者单位	1.Chinese Acad Sci, Inst Oceanol, Key Lab Expt Marine Biol, Qingdao, Peoples R China 2.Univ Chinese Acad Sci, Beijing, Peoples R China 3.Hainan Guandtop Ocean Breeding Co Ltd, Haikou, Peoples R China
推荐引用方式 GB/T 7714	Wei, Jiankai,Zhang, Xiaojun,Yu, Yang,et al. Comparative Transcriptomic Characterization of the Early Development in Pacific White Shrimp Litopenaeus vannamei[J]. PLOS ONE,2014,9(9):e106201.
APA	Wei, Jiankai,Zhang, Xiaojun,Yu, Yang,Huang, Hao,Li, Fuhua,&Xiang, Jianhai.(2014).Comparative Transcriptomic Characterization of the Early Development in Pacific White Shrimp Litopenaeus vannamei.PLOS ONE,9(9),e106201.
MLA	Wei, Jiankai,et al."Comparative Transcriptomic Characterization of the Early Development in Pacific White Shrimp Litopenaeus vannamei".PLOS ONE 9.9(2014):e106201.