Chromosome-level genome assembly of the caenogastropod snail Rapana venosa

doi:10.1038/s41597-023-02459-7

CORC > 海洋研究所 > 中国科学院海洋研究所 > 海洋生态与环境科学重点实验室

	Chromosome-level genome assembly of the caenogastropod snail Rapana venosa
	Song, Hao 2,3,4; Li, Zhuoqing 2,3; Yang, Meijie 2,3,4; Shi, Pu 2,3; Yu, Zhenglin 1; Hu, Zhi 2,3; Zhou, Cong 2,3; Hu, Pengpeng 2,3; Zhang, Tao 2,3,4
刊名	SCIENTIFIC DATA
	2023-08-16
卷号	10 期号:1 页码:10
DOI	10.1038/s41597-023-02459-7
通讯作者	Zhang, Tao(tzhang@qdio.ac.cn)
英文摘要	The carnivorous gastropod Rapana venosa (Valenciennes, 1846) is one of the most notorious ecological invaders worldwide. Here, we present the first high-quality chromosome-scale reference R. venosa genome obtained via PacBio sequencing, Illumina paired-end sequencing, and high-throughput chromosome conformation capture scaffolding. The assembled genome has a size of 2.30 Gb, with a scaffold N50 length of 64.63 Mb, and is anchored to 35 chromosomes. It contains 29,649 protein-coding genes, 77.22% of which were functionally annotated. Given its high heterozygosity (1.41%) and large proportion of repeat sequences (57.72%), it is one of the most complex genome assemblies. This chromosome-level genome assembly of R. venosa is an important resource for understanding molluscan evolutionary adaption and provides a genetic basis for its biological invasion control.
资助项目	National Natural Science Foundation of China[32002409] ; National Natural Science Foundation of China[42206086] ; National Natural Science Foundation of China[31972814] ; National Natural Science Foundation of China[32002374] ; China Agriculture Research System of MOF and MARA ; Creative Team Project of the Laboratory for Marine Ecology and Environmental Science, Qingdao National for Marine Science and Technology[LMEESCTSP-2018] ; Young Elite Scientists Sponsorship Program by CAST[2021QNRC001] ; Youth Innovation Promotion Association by CAS
WOS关键词	PHYLOGENETIC ANALYSIS ; CHESAPEAKE BAY ; MURICIDAE ; VALENCIENNES ; GASTROPOD ; RNA ; PREDICTION ; ALIGNMENT ; REVEALS ; WHELK
WOS研究方向	Science & Technology - Other Topics
语种	英语
出版者	NATURE PORTFOLIO
WOS记录号	WOS:001049218700003
内容类型	期刊论文
源URL	[http://ir.qdio.ac.cn/handle/337002/182792]
专题	海洋研究所_海洋生态与环境科学重点实验室
通讯作者	Zhang, Tao
作者单位	1.Chinese Acad Sci, Yantai Inst Coastal Zone Res, Res & Dev Ctr Efficient Utilizat Coastal Bioresour, Yantai 264003, Peoples R China 2.Univ Chinese Acad Sci, Beijing 100049, Peoples R China 3.Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao 266071, Peoples R China 4.Qingdao Natl Lab Marine Sci & Technol, Lab Marine Ecol & Environm Sci, Qingdao 266237, Peoples R China
推荐引用方式 GB/T 7714	Song, Hao,Li, Zhuoqing,Yang, Meijie,et al. Chromosome-level genome assembly of the caenogastropod snail Rapana venosa[J]. SCIENTIFIC DATA,2023,10(1):10.
APA	Song, Hao.,Li, Zhuoqing.,Yang, Meijie.,Shi, Pu.,Yu, Zhenglin.,...&Zhang, Tao.(2023).Chromosome-level genome assembly of the caenogastropod snail Rapana venosa.SCIENTIFIC DATA,10(1),10.
MLA	Song, Hao,et al."Chromosome-level genome assembly of the caenogastropod snail Rapana venosa".SCIENTIFIC DATA 10.1(2023):10.