Phylogeny, distribution and potential metabolism of candidate bacterial phylum KSB1 | |
Li, Qingmei2,3; Zhou, Yingli2,3; Lu, Rui2,3; Zheng, Pengfei2; Wang, Yong1,2 | |
刊名 | PEERJ |
2022-04-12 | |
卷号 | 10页码:20 |
关键词 | Marine sediment Bioreactor KSB1 Phylogenomics Short-chain hydrocarbon |
ISSN号 | 2167-8359 |
DOI | 10.7717/peerj.13241 |
通讯作者 | Wang, Yong |
英文摘要 | Candidate phylum KSB1 is composed of uncultured bacteria and has been reported across various environments. However, the phylogeny and metabolic potential of KSB1 have not been studied comprehensively. In this study, phylogenomic analysis of KSB1 genomes from public databases and eleven metagenome-assembled genomes (MAGs) from marine and hydrothermal sediments revealed that those genomes were clustered into four clades. Isolation source and relative abundance of KSB1 genomes showed that clade I was particularly abundant in bioreactor sludge. Genes related to dissimilatory reduction of nitrate to ammonia (DNRA), the last step of denitrification converting nitrous oxide to nitrogen and assimilatory sulfur reduction were observed in the expanded genomes of clade I, which may due to horizontal gene transfer that frequently occurred in bioreactor. Annotation and metabolic reconstruction of clades II and IV showed flagellum assembly and chemotaxis genes in the genomes, which may indicate that exploration and sensing for nutrients and chemical gradients are critical for the two clades in deep-sea and hydrothermal sediment. Metabolic potentials of fatty acids and short-chain hydrocarbons utilization were predicted in clades I and IV of KSB1. Collectively, phylogenomic and metabolic analyses of KSB1 clades provide insight into their anaerobic heterotrophic lifestyle and differentiation in potential ecological roles. |
资助项目 | National Key Research and Development Program of China[2018YFC0310005] ; National Key Research and Development Program of China[2016YFC0302501] ; Key Research and Development Program of Hainan Province[E050010406] |
WOS关键词 | GENE ; BIOSYNTHESIS ; NITROGEN ; PROTEIN ; IDENTIFICATION ; INVOLVEMENT ; HYDROCARBON ; RESPIRATION ; EXPRESSION ; DIVERSITY |
WOS研究方向 | Science & Technology - Other Topics |
语种 | 英语 |
出版者 | PEERJ INC |
WOS记录号 | WOS:000790873200008 |
资助机构 | National Key Research and Development Program of China ; Key Research and Development Program of Hainan Province |
内容类型 | 期刊论文 |
源URL | [http://ir.idsse.ac.cn/handle/183446/9485] |
专题 | 深海科学研究部_深海生物学研究室_海洋微生物宏基因组与分子进化研究组 |
通讯作者 | Wang, Yong |
作者单位 | 1.Tsinghua Univ, Shenzhen Int Grad Sch, Inst Marine Engn, Shenzhen, Peoples R China 2.Chinese Acad Sci, Inst Deep Sea Sci & Engn, Sanya, Peoples R China 3.Univ Chinese Acad Sci, Beijing, Peoples R China |
推荐引用方式 GB/T 7714 | Li, Qingmei,Zhou, Yingli,Lu, Rui,et al. Phylogeny, distribution and potential metabolism of candidate bacterial phylum KSB1[J]. PEERJ,2022,10:20. |
APA | Li, Qingmei,Zhou, Yingli,Lu, Rui,Zheng, Pengfei,&Wang, Yong.(2022).Phylogeny, distribution and potential metabolism of candidate bacterial phylum KSB1.PEERJ,10,20. |
MLA | Li, Qingmei,et al."Phylogeny, distribution and potential metabolism of candidate bacterial phylum KSB1".PEERJ 10(2022):20. |
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