Whole-genome sequencing and comparative genomic analysis of a pathogenic Enterocytozoon hepatopenaei strain isolated from Litopenaeus vannamei

doi:10.1007/s10499-022-00990-9

CORC > 烟台海岸带研究所 > 中国科学院烟台海岸带研究所 > 中科院烟台海岸带研究所知识产出

	Whole-genome sequencing and comparative genomic analysis of a pathogenic Enterocytozoon hepatopenaei strain isolated from Litopenaeus vannamei
	Wang, Libao 4; Li, Hui 4; Shi, Wenjun 3,4; Qiao, Yi 4; Wang, Pan 2,4; Yu, Zhijun 2,4; Zhao, Ran 2,4; Hu, Runhao 2,4; Shen, Hui 4; Cheng, Jie 4
刊名	AQUACULTURE INTERNATIONAL
	2022-10-08
页码	24
关键词	Enterocytozoon hepatopenaei Whole-genome sequencing Comparative genomics Litopenaeus vannamei
ISSN号	0967-6120
DOI	10.1007/s10499-022-00990-9
通讯作者	Wan, Xihe(wxh1708@163.com)
英文摘要	Enterocytozoon hepatopenaei (EHP) is an obligate intracellular parasite of shrimp, that may cause growth retardation or even death of shrimp. However, the characteristics of the EHP genome and its evolutionary relationships with other microsporidian genomes are not well understood. In this research, the whole genome of a strain of EHP isolated from Litopenaeus vannamei was sequenced, and detailed functional annotation was performed by using different public databases and genome component analysis. The genome size was 3.03 Mb, with 15 contigs and 2283 protein-coding genes. There were 46 tRNAs and 14 rRNAs (including 6 5S rRNAs, 4 18S rRNAs, and 4 28S rRNAs) in the genome. In addition, details of EHP evolution were revealed by comparative genomic analysis, including analyses of gene family clustering, phylogenetic relationships, gene family expansion and contraction, and synteny. The results will deepen our understanding of the EHP genome and its evolutionary features.
WOS关键词	PACIFIC WHITE SHRIMP ; TANDEM REPEATS ; HEPATOPANCREATIC NECROSIS ; NONCODING RNA ; MICROSPORIDIA ; ANNOTATION ; DATABASE ; PROGRAM ; GENES ; TOOL
WOS研究方向	Fisheries
语种	英语
WOS记录号	WOS:000864984600001
资助机构	Jiangsu Agricultural Science and Technology Innovation Fund ; Six Talent Peaks of Jiangsu Province 2019 ; Earmarked Fund for Jiangsu Agricultural Industry Technology System ; Jiangsu Seed Industry Revitalization Project ; Subei Science and Technology Special Pilot Project
内容类型	期刊论文
源URL	[http://ir.yic.ac.cn/handle/133337/31766]
专题	烟台海岸带研究所_中科院烟台海岸带研究所知识产出
通讯作者	Wan, Xihe
作者单位	1.Huazhong Agr Univ, Coll Fisheries, Wuhan, Hubei, Peoples R China 2.Shanghai Ocean Univ, Natl Demonstrat Ctr Expt Fisheries Sci Educ, Shanghai, Peoples R China 3.Chinese Acad Sci, Yantai Inst Coastal Zone Res, Yantai, Peoples R China 4.Inst Oceanol & Marine Fisheries, 31 Jiaoyu Rd, Nantong 226007, Jiangsu, Peoples R China
推荐引用方式 GB/T 7714	Wang, Libao,Li, Hui,Shi, Wenjun,et al. Whole-genome sequencing and comparative genomic analysis of a pathogenic Enterocytozoon hepatopenaei strain isolated from Litopenaeus vannamei[J]. AQUACULTURE INTERNATIONAL,2022:24.
APA	Wang, Libao.,Li, Hui.,Shi, Wenjun.,Qiao, Yi.,Wang, Pan.,...&Wan, Xihe.(2022).Whole-genome sequencing and comparative genomic analysis of a pathogenic Enterocytozoon hepatopenaei strain isolated from Litopenaeus vannamei.AQUACULTURE INTERNATIONAL,24.
MLA	Wang, Libao,et al."Whole-genome sequencing and comparative genomic analysis of a pathogenic Enterocytozoon hepatopenaei strain isolated from Litopenaeus vannamei".AQUACULTURE INTERNATIONAL (2022):24.