The data of genomic and phenotypic profiles of the N-acyl homoserine lactone-producing algicidal bacterium Stenotrophomonas rhizophila GA1

doi:10.1016/j.dib.2018.10.051

	The data of genomic and phenotypic profiles of the N-acyl homoserine lactone-producing algicidal bacterium Stenotrophomonas rhizophila GA1
	Yin, Panqing 1; Zhang, Qin 2; Zhu, Jianming 3; Wu, Guoqiang 1; Yin, Sanjun 4; Ma, Zhenhua 4; Zhou, Jin 3
刊名	DATA IN BRIEF
	2018-12-01
卷号	21 页码:966-971
ISSN号	2352-3409
DOI	10.1016/j.dib.2018.10.051
英文摘要	Herein, an algicidal strain, Stenotrophomonas rhizophila GA1, was isolated from a marine dinoflagellate and its genome was sequenced using next-generation sequencing technology. The genome size of S. rhizophila GAl was determined to be 5.92 Mb with a G+C content of 62.39%, comprising eight scaffolds of 67 contigs. A total of 4579 functional proteins were assigned according to COG categories. In silico genome annotation protocols identified multiple putative Luxl-like genes located in the upstream position at contig 4. The thin-layer chromatography analysis showed that three kinds of acyl homoserine lactone (AHL) signals could be produced by S. rhizophila GAl. This work describes an algicidal bacterium capable of generating AHL molecules for its ecological adaptation. The annotated genome sequence of this strain may represent a valuable tool for studying algae-bacterium interactions and developing microbial methods to control harmful algae. The genome scaffolds generated are available in the National Center Biotechnology Information (NCBI) BioProject with accession number PRJNA485554. (C) 2018 The Authors. Published by Elsevier Inc.
WOS研究方向	Science & Technology - Other Topics
语种	英语
出版者	ELSEVIER SCIENCE BV
WOS记录号	WOS:000457925900130
内容类型	期刊论文
源URL	[http://ir.lut.edu.cn/handle/2XXMBERH/155660]
专题	生命科学与工程学院
作者单位	1.Lanzhou Univ Technol, Sch Life Sci & Engn, Lanzhou 730050, Gansu, Peoples R China; 2.Jiangxi Univ Finance & Econ, Nanchang 330013, Jiangxi, Peoples R China; 3.Tsinghua Univ, Grad Sch Shenzhen, Devis Ocean Sci & Technol, Shenzhen 518055, Guangdong, Peoples R China; 4.Hengchuang Genet Biotech Co Ltd, Shenzhen 518055, Guangdong, Peoples R China
推荐引用方式 GB/T 7714	Yin, Panqing,Zhang, Qin,Zhu, Jianming,et al. The data of genomic and phenotypic profiles of the N-acyl homoserine lactone-producing algicidal bacterium Stenotrophomonas rhizophila GA1[J]. DATA IN BRIEF,2018,21:966-971.
APA	Yin, Panqing.,Zhang, Qin.,Zhu, Jianming.,Wu, Guoqiang.,Yin, Sanjun.,...&Zhou, Jin.(2018).The data of genomic and phenotypic profiles of the N-acyl homoserine lactone-producing algicidal bacterium Stenotrophomonas rhizophila GA1.DATA IN BRIEF,21,966-971.
MLA	Yin, Panqing,et al."The data of genomic and phenotypic profiles of the N-acyl homoserine lactone-producing algicidal bacterium Stenotrophomonas rhizophila GA1".DATA IN BRIEF 21(2018):966-971.