Transcriptome Sequences Resolve Deep Relationships of the Grape Family

CORC > 昆明植物研究所 > 中国科学院昆明植物研究所 > 中国科学院东亚植物多样性与生物地理学重点实验室

	Transcriptome Sequences Resolve Deep Relationships of the Grape Family
	Wen, Jun 1; Xiong, Zhiqiang 2; Nie, Ze-Long 3; Mao, Likai 2; Zhu, Yabing 2; Kan, Xian-Zhao 4; Ickert-Bond, Stefanie M.5,6; Gerrath, Jean 7; Zimmer, Elizabeth A.1; Fang, Xiao-Dong 2
刊名	PLOS ONE
	2013-09-17
卷号	8 期号:9 页码:e74394
关键词	DISPERSAL-VICARIANCE ANALYSIS NUCLEAR GENE DATA RNA-SEQ DATA PHYLOGENETIC ANALYSIS MOLECULAR PHYLOGENY MAXIMUM-LIKELIHOOD ANGIOSPERM DIVERSIFICATION PARTHENOCISSUS VITACEAE SEED MORPHOLOGY EVOLUTION
ISSN号	1932-6203
通讯作者	Wen, J (reprint author), Smithsonian Inst, Dept Bot, Natl Museum Nat Hist, MRC166, Washington, DC 20560 USA.,wenj@si.edu ; fangxd@genomics.org.cn
英文摘要	Previous phylogenetic studies of the grape family (Vitaceae) yielded poorly resolved deep relationships, thus impeding our understanding of the evolution of the family. Next-generation sequencing now offers access to protein coding sequences very easily, quickly and cost-effectively. To improve upon earlier work, we extracted 417 orthologous single-copy nuclear genes from the transcriptomes of 15 species of the Vitaceae, covering its phylogenetic diversity. The resulting transcriptome phylogeny provides robust support for the deep relationships, showing the phylogenetic utility of transcriptome data for plants over a time scale at least since the mid-Cretaceous. The pros and cons of transcriptome data for phylogenetic inference in plants are also evaluated.
学科主题	Multidisciplinary Sciences
WOS标题词	Science & Technology
类目[WOS]	Multidisciplinary Sciences
研究领域[WOS]	Science & Technology - Other Topics
关键词[WOS]	DISPERSAL-VICARIANCE ANALYSIS ; NUCLEAR GENE DATA ; RNA-SEQ DATA ; PHYLOGENETIC ANALYSIS ; MOLECULAR PHYLOGENY ; MAXIMUM-LIKELIHOOD ; ANGIOSPERM DIVERSIFICATION ; PARTHENOCISSUS VITACEAE ; SEED MORPHOLOGY ; EVOLUTION
收录类别	SCI
资助信息	Office of the Smithsonian Undersecretary of Science; US National Science Foundation [DEB 0743474, DEB 0743499]; National Museum of Natural History of the Smithsonian Institution; trust funds
语种	英语
WOS记录号	WOS:000324547300039
公开日期	2013-11-12
内容类型	期刊论文
源URL	[http://ir.kib.ac.cn/handle/151853/17304]
专题	昆明植物研究所_中国科学院东亚植物多样性与生物地理学重点实验室
作者单位	1.Smithsonian Inst, Dept Bot, Natl Museum Nat Hist, MRC166, Washington, DC 20560 USA 2.BGI Shenzhen, Shenzhen, Peoples R China 3.Chinese Acad Sci, Kunming Inst Bot, Key Lab Biodivers & Biogeog, Kunming, Yunnan, Peoples R China 4.Anhui Normal Univ, Coll Life Sci, Wuhu, Anhui, Peoples R China 5.Univ Alaska Fairbanks, UA Museum North Herbarium, Fairbanks, AK USA 6.Univ Alaska Fairbanks, Dept Biol & Wildlife, Fairbanks, AK USA 7.Univ No Iowa, Dept Biol, Cedar Falls, IA 50614 USA
推荐引用方式 GB/T 7714	Wen, Jun,Xiong, Zhiqiang,Nie, Ze-Long,et al. Transcriptome Sequences Resolve Deep Relationships of the Grape Family[J]. PLOS ONE,2013,8(9):e74394.
APA	Wen, Jun.,Xiong, Zhiqiang.,Nie, Ze-Long.,Mao, Likai.,Zhu, Yabing.,...&Fang, Xiao-Dong.(2013).Transcriptome Sequences Resolve Deep Relationships of the Grape Family.PLOS ONE,8(9),e74394.
MLA	Wen, Jun,et al."Transcriptome Sequences Resolve Deep Relationships of the Grape Family".PLOS ONE 8.9(2013):e74394.