Integrated phylogenomics and fossil data illuminate the evolution of beetles

doi:10.1098/rsos.211771

	Integrated phylogenomics and fossil data illuminate the evolution of beetles
	Cai, Chenyang 13,14,15; Tihelka, Erik 13,14,15; Giacomelli, Mattia 12; Lawrence, John F.11; Kundrata, Robin 10; Yamamoto, Shuhei 9; Thayer, Margaret K.8; Newton, Alfred F.8; Leschen, Richard A. B.7; Gimmel, Matthew L.6
刊名	ROYAL SOCIETY OPEN SCIENCE
	2022-03-23
卷号	9 期号:3 页码:19
关键词	Coleoptera classification diversification phylogenomics substitution modelling CAT-GTR
ISSN号	2054-5703
DOI	10.1098/rsos.211771
通讯作者	Cai, Chenyang(cycai@nigpas.ac.cn) ; Tihelka, Erik(wn20250@bristol.ac.uk) ; Donoghue, Philip C. J.(phil.donoghue@bristol.ac.uk)
英文摘要	Beetles constitute the most biodiverse animal order with over 380 000 described species and possibly several million more yet unnamed. Recent phylogenomic studies have arrived at considerably incongruent topologies and widely varying estimates of divergence dates for major beetle clades. Here, we use a dataset of 68 single-copy nuclear protein-coding (NPC) genes sampling 129 out of the 193 recognized extant families as well as the first comprehensive set of fully justified fossil calibrations to recover a refined timescale of beetle evolution. Using phylogenetic methods that counter the effects of compositional and rate heterogeneity, we recover a topology congruent with morphological studies, which we use, combined with other recent phylogenomic studies, to propose several formal changes in the classification of Coleoptera: Scirtiformia and Scirtoidea sensu nov., Clambiformia ser. nov. and Clamboidea sensu nov., Rhinorhipiformia ser. nov., Byrrhoidea sensu nov., Dryopoidea stat. res., Nosodendriformia ser. nov. and Staphyliniformia sensu nov., and Erotyloidea stat. nov., Nitiduloidea stat. nov. and Cucujoidea sensu nov., alongside changes below the superfamily level. Our divergence time analyses recovered a late Carboniferous origin of Coleoptera, a late Palaeozoic origin of all modern beetle suborders and a Triassic-Jurassic origin of most extant families, while fundamental divergences within beetle phylogeny did not coincide with the hypothesis of a Cretaceous Terrestrial Revolution.
WOS关键词	COMPOSITIONAL HETEROGENEITY ; PHYLOGENETIC-RELATIONSHIPS ; MORPHOLOGICAL CHARACTERS ; COMPREHENSIVE PHYLOGENY ; MITOCHONDRIAL GENOMES ; MOLECULAR PHYLOGENY ; BAYESIAN-ESTIMATION ; INSECTA COLEOPTERA ; DIVERGENCE TIMES ; PERMIAN BEETLE
WOS研究方向	Science & Technology - Other Topics
语种	英语
出版者	ROYAL SOC
WOS记录号	WOS:000779916300009
内容类型	期刊论文
源URL	[http://ir.nigpas.ac.cn/handle/332004/40722]
专题	中国科学院南京地质古生物研究所
通讯作者	Cai, Chenyang; Tihelka, Erik; Donoghue, Philip C. J.
作者单位	1.Agr & Agri Food Canada, Canadian Natl Collect Insects Arachnids & Nematod, 960 Carling Ave, Ottawa, ON K1A 0C6, Canada 2.Amer Museum Nat Hist, Div Invertebrate Zool, Cent Pk West & 79th St, New York, NY 10024 USA 3.Univ Kansas, Dept Ecol & Evolutionary Biol, 1501 Crestline Dr Suite 140, Lawrence, KS 66045 USA 4.Univ Kansas, Div Entomol, Nat Hist Museum, 1501 Crestline Dr Suite 140, Lawrence, KS 66045 USA 5.Hebei Normal Univ, Coll Life Sci, Shijiazhuang 050024, Hebei, Peoples R China 6.Santa Barbara Museum Nat Hist, Invertebrate Zool Dept, 2559 Puesta Sol Rd, Santa Barbara, CA 93105 USA 7.New Zealand Arthropod Collect, Manaaki Whenua Landcare Res, Private Bag 92170, Auckland, New Zealand 8.Field Museum Nat Hist, Negaunee Integrat Res Ctr, 1400 S Lake Shore Dr, Chicago, IL 60605 USA 9.Hokkaido Univ, Hokkaido Univ Museum, Kita Ku, Kita 8,Nishi 5, Sapporo, Hokkaido 0600808, Japan 10.Palacky Univ, Fac Sci, Dept Zool, 17 Listopadu 50, Olomouc 77146, Czech Republic
推荐引用方式 GB/T 7714	Cai, Chenyang,Tihelka, Erik,Giacomelli, Mattia,et al. Integrated phylogenomics and fossil data illuminate the evolution of beetles[J]. ROYAL SOCIETY OPEN SCIENCE,2022,9(3):19.
APA	Cai, Chenyang.,Tihelka, Erik.,Giacomelli, Mattia.,Lawrence, John F..,Kundrata, Robin.,...&Donoghue, Philip C. J..(2022).Integrated phylogenomics and fossil data illuminate the evolution of beetles.ROYAL SOCIETY OPEN SCIENCE,9(3),19.
MLA	Cai, Chenyang,et al."Integrated phylogenomics and fossil data illuminate the evolution of beetles".ROYAL SOCIETY OPEN SCIENCE 9.3(2022):19.