Resequencing 545 ginkgo genomes across the world reveals the evolutionary history of the living fossil

doi:10.1038/s41467-019-12133-5

CORC > 植物研究所 > 中国科学院植物研究所 > 系统与进化植物学国家重点实验室

	Resequencing 545 ginkgo genomes across the world reveals the evolutionary history of the living fossil
	Zhao, Yun-Peng ; Fan, Guangyi ; Yin, Ping-Ping ; Sun, Shuai 6; Li, Ning 6; Hong, Xiaoning 6,9; Hu, Gang 6; Zhang, He 6; Zhang, Fu-Min ; Han, Jing-Dan
刊名	NATURE COMMUNICATIONS
	2019
卷号	10
ISSN号	2041-1723
DOI	10.1038/s41467-019-12133-5
文献子类	Article
英文摘要	As Charles Darwin anticipated, living fossils provide excellent opportunities to study evolutionary questions related to extinction, competition, and adaptation. Ginkgo (Ginkgo biloba L.) is one of the oldest living plants and a fascinating example of how people have saved a species from extinction and assisted its resurgence. By resequencing 545 genomes of ginkgo trees sampled from 51 populations across the world, we identify three refugia in China and detect multiple cycles of population expansion and reduction along with glacial admixture between relict populations in the southwestern and southern refugia. We demonstrate multiple anthropogenic introductions of ginkgo from eastern China into different continents. Further analyses reveal bioclimatic variables that have affected the geographic distribution of ginkgo and the role of natural selection in ginkgo's adaptation and resilience. These investigations provide insights into the evolutionary history of ginkgo trees and valuable genomic resources for further addressing various questions involving living fossil species.
学科主题	Multidisciplinary Sciences
出版地	LONDON
WOS关键词	BILOBA L. GINKGOACEAE ; SELECTIVE SWEEPS ; PHYLOGEOGRAPHY ; DIVERSITY ; CHINA ; CHLOROPLAST ; MITOCHONDRIAL ; SIGNATURES ; INFERENCE ; TREE
WOS研究方向	Science & Technology - Other Topics
语种	英语
出版者	NATURE PUBLISHING GROUP
WOS记录号	WOS:000485685900040
资助机构	National Key Research and Development Program of China [2016YFE0122000, 2017YFA0605104] ; National Natural Science Foundation of ChinaNational Natural Science Foundation of China (NSFC) [31870190, 31461123001, J1310002] ; Chinese Academy of SciencesChinese Academy of Sciences [XDB31000000, XDB31020000] ; CAS/SAFEA International Partnership Program for Creative Research TeamsChinese Academy of Sciences
内容类型	期刊论文
源URL	[http://ir.ibcas.ac.cn/handle/2S10CLM1/19882]
专题	系统与进化植物学国家重点实验室
作者单位	1.Univ Macau, Inst Chinese Med Sci, State Key Lab Qual Res Chinese Med, Macau, Peoples R China 2.Chiba Univ, Coll Liberal Arts & Sci, Chiba 2638522, Japan 3.James D Watson Inst Genome Sci, Hangzhou 310058, Zhejiang, Peoples R China 4.BGI Shenzhen, BGI Fuyang, Fuyang 236009, Anhui, Peoples R China 5.BGI Shenzhen, China Natl GeneBank, Shenzhen 518120, Zhejiang, Peoples R China 6.Zhejiang Univ, Coll Life Sci, Lab Systemat & Evolutionary Bot & Biodivers, Hangzhou 310058, Zhejiang, Peoples R China 7.BGI Shenzhen, BGI Qingdao, Qingdao 266555, Shandong, Peoples R China 8.Chinese Acad Sci, Inst Bot, State Key Lab Systemat & Evolutionary Bot, Beijing 100093, Peoples R China 9.Univ Chinese Acad Sci, Beijing 100049, Peoples R China 10.Univ Chinese Acad Sci, BGI Educ Ctr, Shenzhen 518083, Guangdong, Peoples R China
推荐引用方式 GB/T 7714	Zhao, Yun-Peng,Fan, Guangyi,Yin, Ping-Ping,et al. Resequencing 545 ginkgo genomes across the world reveals the evolutionary history of the living fossil[J]. NATURE COMMUNICATIONS,2019,10.
APA	Zhao, Yun-Peng.,Fan, Guangyi.,Yin, Ping-Ping.,Sun, Shuai.,Li, Ning.,...&Ge, Song.(2019).Resequencing 545 ginkgo genomes across the world reveals the evolutionary history of the living fossil.NATURE COMMUNICATIONS,10.
MLA	Zhao, Yun-Peng,et al."Resequencing 545 ginkgo genomes across the world reveals the evolutionary history of the living fossil".NATURE COMMUNICATIONS 10(2019).