Phylogenomics disentangles the evolutionary history of spruces (Picea) in the Qinghai-Tibetan Plateau: Implications for the design of population genetic studies and species delimitation of conifers

doi:10.1016/j.ympev.2019.106612

CORC > 植物研究所 > 中国科学院植物研究所 > 系统与进化植物学国家重点实验室

	Phylogenomics disentangles the evolutionary history of spruces (Picea) in the Qinghai-Tibetan Plateau: Implications for the design of population genetic studies and species delimitation of conifers
	Shen, Ting-Ting ; Ran, Jin-Hua ; Wang, Xiao-Quan
刊名	MOLECULAR PHYLOGENETICS AND EVOLUTION
	2019
卷号	141
关键词	Phylotranscriptomics Recent radiation Hybrid origin Speciation Qinghai-Tibetan Plateau Picea
ISSN号	1055-7903
DOI	10.1016/j.ympev.2019.106612
文献子类	Article
英文摘要	A laborious and difficult task in current tree of life reconstruction is to resolve evolutionary relationships of closely related congeneric species that originated from recent radiations. This is particularly difficult for forest species with long generation times and large effective population sizes such as conifers. The Qinghai-Tibetan Plateau (QTP) and adjacent areas are considered a species diversity center of Picea, harboring 11 species (including 5 varieties) of this genus, but evolutionary relationships of these species are far from being resolved due to recent radiations, morphological convergence, and frequent interspecific gene flow. In this study, we use these spruce species to test whether phylotranscriptomic analysis, combined with population genetic analysis, can disentangle their evolutionary relationships, and to explore whether reticulate evolution has occurred among them. Phylogenomic analyses indicate that all spruce species in the QTP and neighboring areas, except P. asperata and P. crassifolia, cluster together, and in particular, nearly all taxa (including varieties) reflect reciprocally monophyletic lineages, although the two species P. likiangensis and P. brachytyla are not monophyletic. We found that, compared to herbaceous plants, many more genes (a minimum of 600 OGs for Picea) are required to resolve interspecific relationships of conifers. Contrary to previous studies, our data do not support a hybrid origin of P. purpurea, but suggests a hybrid origin for P. brachytyla var. brachytyla and P. likiangensis var. rubescens. We emphasize that the species or species complex used for population genetic and phylogeographical studies should be monophyletic.
学科主题	Biochemistry & Molecular Biology ; Evolutionary Biology ; Genetics & Heredity
电子版国际标准刊号	1095-9513
出版地	SAN DIEGO
WOS关键词	PINE PINUS-DENSATA ; RNA-SEQ DATA ; MITOCHONDRIAL-DNA ; NATURAL HYBRIDIZATION ; PHYLOGENETIC ANALYSIS ; MOLECULAR PHYLOGENY ; HYBRID SPECIATION ; NUCLEAR GENES ; BLACK SPRUCE ; INTROGRESSION
WOS研究方向	Biochemistry & Molecular Biology ; Evolutionary Biology ; Genetics & Heredity
语种	英语
出版者	ACADEMIC PRESS INC ELSEVIER SCIENCE
WOS记录号	WOS:000492748200007
资助机构	National Key R&D Program of China [2017YFA0605100] ; National Natural Science Foundation of ChinaNational Natural Science Foundation of China (NSFC) [31330008, 31370250] ; Strategic Priority Research Program, CAS [XDB31000000] ; Key Research Program of Frontier Sciences, CAS [QYZDJ-SSW-SMC027] ; Youth Innovation Promotion Association CAS [2012070]
内容类型	期刊论文
源URL	[http://ir.ibcas.ac.cn/handle/2S10CLM1/19448]
专题	系统与进化植物学国家重点实验室
作者单位	1.Ran, Jin-Hua 2.Univ Chinese Acad Sci, Beijing 100049, Peoples R China 3.Chinese Acad Sci, Inst Bot, State Key Lab Systemat & Evolutionary Bot, Beijing 100093, Peoples R China 4.[Shen, Ting-Ting
推荐引用方式 GB/T 7714	Shen, Ting-Ting,Ran, Jin-Hua,Wang, Xiao-Quan. Phylogenomics disentangles the evolutionary history of spruces (Picea) in the Qinghai-Tibetan Plateau: Implications for the design of population genetic studies and species delimitation of conifers[J]. MOLECULAR PHYLOGENETICS AND EVOLUTION,2019,141.
APA	Shen, Ting-Ting,Ran, Jin-Hua,&Wang, Xiao-Quan.(2019).Phylogenomics disentangles the evolutionary history of spruces (Picea) in the Qinghai-Tibetan Plateau: Implications for the design of population genetic studies and species delimitation of conifers.MOLECULAR PHYLOGENETICS AND EVOLUTION,141.
MLA	Shen, Ting-Ting,et al."Phylogenomics disentangles the evolutionary history of spruces (Picea) in the Qinghai-Tibetan Plateau: Implications for the design of population genetic studies and species delimitation of conifers".MOLECULAR PHYLOGENETICS AND EVOLUTION 141(2019).