Genetic variation and population genetic structure of Laodelphax striatellus via genome-wide single nucleotide polymorphisms from specific-locus amplified fragment-sequencing

doi:10.1111/jen.12597

CORC > 成都生物研究所 > 中国科学院成都生物研究所 > 生物多样性与生态系统服务领域 > 中国科学院环境与应用微生物重点实验室

	Genetic variation and population genetic structure of Laodelphax striatellus via genome-wide single nucleotide polymorphisms from specific-locus amplified fragment-sequencing
	Wang, Xingya 4; Lu, Bin 3; Shao, Lingyun 2; Yu, Fengquan 2; Zheng, Wenjing 1; Sun, Fuyu 2
刊名	JOURNAL OF APPLIED ENTOMOLOGY
	2019
卷号	143 期号:4 页码:315-327
关键词	demographic history gene flow genetic structure small brown planthopper specific-locus amplified fragment sequencing
ISSN号	0931-2048
DOI	10.1111/jen.12597
产权排序	2
文献子类	Review
英文摘要	The small brown planthopper (SBPH), Laodelphax striatellus, is one of the most destructive agricultural pests that causes serious economic loss in the main rice-producing areas of China. To clarify issues such as the genetic differentiation, gene flow and population genetic structure of SBPH populations, we investigated the genetic diversity, genetic structure and phylogeography of 27 SBPH populations at 23 sampling sites from three climatic zones of China using specific-locus amplified fragment sequencing (SLAF-seq) for large-scale single nucleotide polymorphism (SNP) detection. In total, 115.95 M reads, 56,355 polymorphic specific-locus amplified fragments were developed, and 32,556 reliable single nucleotides (SNPs) were detected. The results indicated that the genotypes of many polymorphism sites had low heterozygosity in every population. Overall, the pairwise F-ST values between the populations varied from 0.056 to 0.092; it suggested the lack of strong differentiation among three climatic zone groups, respectively. It also suggested a strong level of gene flow (Nm) among populations in different climate zones, ranging from 28.864 to 35.197. Phylogenetic analyses, principal component analysis (PCA), Bayesian clustering method and AMOVA revealed that there was no evidence genetic clustering in three main bioclimatic zones. Neutrality testing provided strong evidence for a recent rapid expansion without any recent genetic bottleneck in these populations. Accordingly, the results of the present study should be beneficial for SBPH management and provide insight into the genetics of SBPH.
学科主题	Entomology/pest Control
URL标识	查看原文
WOS关键词	SMALL BROWN PLANTHOPPER ; SOGATELLA-FURCIFERA HEMIPTERA ; RICE-STRIPE-VIRUS ; NILAPARVATA-LUGENS ; MAXIMUM-LIKELIHOOD ; DELPHACIDAE ; DIVERSITY ; MIGRATION ; FRAMEWORK ; ALIGNMENT
WOS研究方向	Entomology
语种	英语
出版者	WILEY
WOS记录号	WOS:000465174800001
内容类型	期刊论文
源URL	[http://210.75.237.14/handle/351003/31016]
专题	食品安全与环境治理领域_中国科学院环境与应用微生物重点实验室
通讯作者	Sun, Fuyu
作者单位	1.Liaoning Acad Agr Sci, Inst Rice Res, Shenyang, Liaoning, Peoples R China 2.Liaoning Acad Agr Sci, Inst Plant Protect, Shenyang, Liaoning, Peoples R China; 3.Chinese Acad Sci, Chengdu Inst Biol, Chengdu, Sichuan, Peoples R China; 4.Shenyang Agr Univ, Plant Protect Coll, Shenyang, Liaoning, Peoples R China;
推荐引用方式 GB/T 7714	Wang, Xingya,Lu, Bin,Shao, Lingyun,et al. Genetic variation and population genetic structure of Laodelphax striatellus via genome-wide single nucleotide polymorphisms from specific-locus amplified fragment-sequencing[J]. JOURNAL OF APPLIED ENTOMOLOGY,2019,143(4):315-327.
APA	Wang, Xingya,Lu, Bin,Shao, Lingyun,Yu, Fengquan,Zheng, Wenjing,&Sun, Fuyu.(2019).Genetic variation and population genetic structure of Laodelphax striatellus via genome-wide single nucleotide polymorphisms from specific-locus amplified fragment-sequencing.JOURNAL OF APPLIED ENTOMOLOGY,143(4),315-327.
MLA	Wang, Xingya,et al."Genetic variation and population genetic structure of Laodelphax striatellus via genome-wide single nucleotide polymorphisms from specific-locus amplified fragment-sequencing".JOURNAL OF APPLIED ENTOMOLOGY 143.4(2019):315-327.