Composition vector approach to whole-genome-based prokaryotic phylogeny: Success and foundations

doi:10.1016/j.jbiotec.2009.12.015

	Composition vector approach to whole-genome-based prokaryotic phylogeny: Success and foundations
	Li, QA ; Xu, Z ; Hao, BL
	2010
会议日期	JUN, 2009
会议地点	Shanghai, PEOPLES R CHINA
关键词	MOLECULAR PHYLOGENY TREES RECONSTRUCTION SEQUENCES EVOLUTION TAXONOMY
卷号	149
期号	3
DOI	10.1016/j.jbiotec.2009.12.015
页码	115-119
英文摘要	Composition vector approach to prokaryotic phylogeny provides an alignment-free and parameter-free method based on whole-genome data. It has also been applied to viruses and fungi. In all studied cases the inferred phylogenetic relationships agree well with taxonomic knowledge in major groupings and fine branchings. In this review article, after demonstrating its successful application to a collection of 892 genomes including 62 Archaea, 822 Bacteria and 8 Eukarya, we will outline some ongoing work towards the foundations of this new approach. (C) 2009 Elsevier B.V. All rights reserved.
会议录	JOURNAL OF BIOTECHNOLOGY
会议录出版者	ELSEVIER SCIENCE BV
会议录出版地	AMSTERDAM
语种	英语
URL标识	查看原文
ISSN号	0168-1656
WOS研究方向	Biotechnology & Applied Microbiology
内容类型	会议论文
源URL	[http://ir.itp.ac.cn/handle/311006/23634]
专题	SCI会议论文
作者单位	1.Fudan Univ, Dept Phys, T Life Res Ctr, Shanghai 200433, Peoples R China 2.Acad Sinica, Inst Theoret Phys, Beijing 100190, Peoples R China 3.Santa Fe Inst, Santa Fe, NM 87501 USA
推荐引用方式 GB/T 7714	Li, QA,Xu, Z,Hao, BL. Composition vector approach to whole-genome-based prokaryotic phylogeny: Success and foundations[C]. 见:. Shanghai, PEOPLES R CHINA. JUN, 2009.