An Open-source Collaboration Environment for Metagenomics Research

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	An Open-source Collaboration Environment for Metagenomics Research
	Xu, J.
刊名	.IEEE International Conference on eScience
	2011
期号	3
关键词	Metagenomics collaboration environment data- and computation-intensive computing
中文摘要	By analyzing metagenomic data from microbial communities, the taxonomical and functional component of hundreds of previously unknown microbial communities have been elucidated in the past few years. However, metagenomic data analyses are both data- and computation-intensive, which require extensive computational power. Most of the current metagenomic data analysis software were designed to be used on a single PC (Personal Computer), which could not match with the fast increasing number of large metagenomic projects’ computational requirements. Therefore, advanced computational environment has to be developed to cope with such needs. In this paper, we proposed an open-source collaboration environment for metagenomic data analysis, which enabled the parallel analysis of multiple metagenomic datasets at the same time. By using this collaboration environment, researchers from different locations could submit their data, collaboratively configure the analysis pipeline, and perform data analysis efficiently. As of now, more than 30 metagenomic data analysis projects have already been conducted based on this environment
学科主题	功能基因组
收录类别	EI
语种	英语
公开日期	2012-06-01
内容类型	期刊论文
源URL	[http://ir.qibebt.ac.cn:8080/handle/337004/971]
专题	青岛生物能源与过程研究所_单细胞中心
推荐引用方式 GB/T 7714	Xu, J.. An Open-source Collaboration Environment for Metagenomics Research[J]. .IEEE International Conference on eScience,2011(3).
APA	Xu, J..(2011).An Open-source Collaboration Environment for Metagenomics Research..IEEE International Conference on eScience(3).
MLA	Xu, J.."An Open-source Collaboration Environment for Metagenomics Research"..IEEE International Conference on eScience .3(2011).