Complete genome sequence of Rhodococcus sp. NJ-530, a DMSP-degrading actinobacterium isolated from Antarctic sea ice

doi:10.1007/s13205-019-1889-z

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	Complete genome sequence of Rhodococcus sp. NJ-530, a DMSP-degrading actinobacterium isolated from Antarctic sea ice
	Qu, Changfeng 1,2,3; Wang, Wenyu 2; Dong, Jianjun 1; Wang, Xixi 2; Gao, Xuxu 4; Zhang, Honghai 4; Zheng, Zhou 2,3; Yin, Hua 1; Miao, Jinlai 2,3
刊名	3 BIOTECH
	2019-10
卷号	9 期号:10
关键词	Antarctic marine bacteria Rhodococcus Complete genome sequence DMSP cleavage DMS dddD
ISSN号	2190-572X
DOI	10.1007/s13205-019-1889-z
英文摘要	Dimethylsulfide (DMS), a climatically important gas generated by dimethylsulfoniopropionate (DMSP) degradation, plays an important role in the global sulfur cycle and affects the global climate. Marine bacteria are the primary mediators of DMSP degradation and DMS production. Here, we present the complete genome sequence of Rhodococcus sp. NJ-530, isolated from Antarctic sea ice, which utilizes DMSP as a sole carbon and energy source, degrading DMSP into DMS. The genome of strain NJ-530 consists of 7371 protein-coding sequences (CDSs) with 54 tRNA genes and 15 rRNA operons as 5S-16S-23S rRNA. The strain has one circular chromosome of 6,408,544 bp with 6331 CDSs and 62.41% GC content. Genomic annotation revealed that Rhodococcus sp. NJ-530 may have a DMSP cleavage gene cluster, including dddD, dddB and dddC, suggesting the existence of the DddD-type DMSP cleavage pathway. The complete genome sequence of Rhodococcus sp. NJ-530 will provide useful information for better understanding of the molecular mechanism underlying marine DMSP degradation and Antarctic DMS production.
资助项目	Ningbo Public Service Platform for High-Value Utilization of Marine Biological Resources[NBHY-2017-P2]
WOS研究方向	Biotechnology & Applied Microbiology
语种	英语
出版者	SPRINGER HEIDELBERG
WOS记录号	WOS:000486732300001
内容类型	期刊论文
源URL	[http://ir.fio.com.cn:8080/handle/2SI8HI0U/30269]
专题	业务部门_海洋生态研究中心
通讯作者	Yin, Hua; Miao, Jinlai
作者单位	1.State Key Lab Biol Fermentat Engn Beer, Qingdao 266100, Shandong, Peoples R China 2.Minist Nat Resources, Inst Oceanog 1, Qingdao 266061, Shandong, Peoples R China 3.Qingdao Natl Lab Marine Sci & Technol, Lab Marine Drugs & Bioprod, Qingdao 266071, Shandong, Peoples R China 4.Ocean Univ China, Minist Educ, Key Lab Marine Chem Theory & Technol, Qingdao 266100, Shandong, Peoples R China
推荐引用方式 GB/T 7714	Qu, Changfeng,Wang, Wenyu,Dong, Jianjun,et al. Complete genome sequence of Rhodococcus sp. NJ-530, a DMSP-degrading actinobacterium isolated from Antarctic sea ice[J]. 3 BIOTECH,2019,9(10).
APA	Qu, Changfeng.,Wang, Wenyu.,Dong, Jianjun.,Wang, Xixi.,Gao, Xuxu.,...&Miao, Jinlai.(2019).Complete genome sequence of Rhodococcus sp. NJ-530, a DMSP-degrading actinobacterium isolated from Antarctic sea ice.3 BIOTECH,9(10).
MLA	Qu, Changfeng,et al."Complete genome sequence of Rhodococcus sp. NJ-530, a DMSP-degrading actinobacterium isolated from Antarctic sea ice".3 BIOTECH 9.10(2019).