Whole genome resequencing data for three rockfish species of Sebastes

doi:10.1038/s41597-019-0100-z

CORC > 自然资源部第一海洋研究所 > 自然资源部第一海洋研究所 > 业务部门 > 海洋生态研究中心

	Whole genome resequencing data for three rockfish species of Sebastes
	Xu, Shengyong 1; Zhao, Linlin 2; Xiao, Shijun 3; Gao, Tianxiang 1
刊名	SCIENTIFIC DATA
	2019-06-20
卷号	6
DOI	10.1038/s41597-019-0100-z
英文摘要	Here we report Illumina-based whole genome sequencing of three rockfish species of Sebastes in northwest Pacific. The whole genomic DNA was used to prepare 350-bp pair-end libraries and the high-throughput sequencing yielded 128.5, 137.5, and 124.8 million mapped reads corresponding to 38.54, 41.26, and 37.43 Gb sequence data for S. schlegelii, S. koreanus, and S. nudus, respectively. The k-mer analyses revealed genome sizes were 846.4, 832.5, and 813.1 Mb and the sequencing coverages were 45x, 49x, and 46x for three rockfish, respectively. Comparative genomic analyses identified 46,624 genome-wide single nucleotide polymorphisms (SNPs). Phylogenetic analysis revealed closer relationships of the three species, compared to other six rockfish species. Demographic analysis identified contrasting changes between S. schlegelii and other two species, suggesting drastically different response to climate changes. The reported genome data in this study are valuable for further studies on comparative genomics and evolutionary biology of rockfish species.
URL标识	查看原文
资助项目	National Natural Science Foundation of China[41776171] ; National Natural Science Foundation of China[31172447] ; National Natural Science Foundation of China[41176117]
WOS研究方向	Science & Technology - Other Topics
语种	英语
出版者	NATURE PUBLISHING GROUP
WOS记录号	WOS:000472446900001
内容类型	期刊论文
源URL	[http://ir.fio.com.cn:8080/handle/2SI8HI0U/27634]
专题	业务部门_海洋生态研究中心
通讯作者	Gao, Tianxiang
作者单位	1.Zhejiang Ocean Univ, Fishery Coll, 1st Haidanan Rd, Zhoushan 316022, Peoples R China 2.Minist Nat Resources, Inst Oceanog 1, 6th Xianxialing Rd, Qingdao 266061, Shandong, Peoples R China 3.Wuhan Univ Technol, Sch Comp Sci & Technol, 122th Luoshi Rd, Wuhan 430070, Hubei, Peoples R China
推荐引用方式 GB/T 7714	Xu, Shengyong,Zhao, Linlin,Xiao, Shijun,et al. Whole genome resequencing data for three rockfish species of Sebastes[J]. SCIENTIFIC DATA,2019,6.
APA	Xu, Shengyong,Zhao, Linlin,Xiao, Shijun,&Gao, Tianxiang.(2019).Whole genome resequencing data for three rockfish species of Sebastes.SCIENTIFIC DATA,6.
MLA	Xu, Shengyong,et al."Whole genome resequencing data for three rockfish species of Sebastes".SCIENTIFIC DATA 6(2019).