De novo assembly of soybean wild relatives for pan-genome analysis of   diversity and agronomic traits

doi:10.1038/nbt.2979

CORC > 北京大学 > 生命科学学院

	De novo assembly of soybean wild relatives for pan-genome analysis of diversity and agronomic traits
	Li, Ying-hui ; Zhou, Guangyu ; Ma, Jianxin ; Jiang, Wenkai ; Jin, Long-guo ; Zhang, Zhouhao ; Guo, Yong ; Zhang, Jinbo ; Sui, Yi ; Zheng, Liangtao ; Zhang, Shan-shan ; Zuo, Qiyang ; Shi, Xue-hui ; Li, Yan-fei ; Zhang, Wan-ke ; Hu, Yiyao ; Kong, Guanyi ; Hong, Hui-long ; Tan, Bing ; Song, Jian ; Liu, Zhang-xiong ; Wang, Yaoshen ; Ruan, Hang ; Yeung, Carol K. L. ; Liu, Jian ; Wang, Hailong ; Zhang, Li-juan ; Guan, Rong-xia ; Wang, Ke-jing ; Li, Wen-bin ; Chen, Shou-yi ; Chang, Ru-zhen ; Jiang, Zhi ; Jackson, Scott A. ; Li, Ruiqiang ; Qiu, Li-juan
刊名	nature biotechnology
	2014
关键词	MAXIMUM-LIKELIHOOD DISEASE RESISTANCE GENETIC DIVERSITY HIGH-THROUGHPUT OPEN SOFTWARE MOSAIC-VIRUS GLYCINE-SOJA SEQUENCE ALIGNMENT ARABIDOPSIS
DOI	10.1038/nbt.2979
英文摘要	Wild relatives of crops are an important source of genetic diversity for agriculture, but their gene repertoire remains largely unexplored. We report the establishment and analysis of a pan-genome of Glycine soja, the wild relative of cultivated soybean Glycine max, by sequencing and de novo assembly of seven phylogenetically and geographically representative accessions. Intergenomic comparisons identified lineage-specific genes and genes with copy number variation or large-effect mutations, some of which show evidence of positive selection and may contribute to variation of agronomic traits such as biotic resistance, seed composition, flowering and maturity time, organ size and final biomass. Approximately 80% of the pan-genome was present in all seven accessions (core), whereas the rest was dispensable and exhibited greater variation than the core genome, perhaps reflecting a role in adaptation to diverse environments. This work will facilitate the harnessing of untapped genetic diversity from wild soybean for enhancement of elite cultivars.; http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000343763800022&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=8e1609b174ce4e31116a60747a720701 ; Biotechnology & Applied Microbiology; SCI(E); EI; PubMed; 41; ARTICLE; sjackson@uga.edu; lirq@novogene.cn; qiulijuan@caas.cn; 10; 1045-+; 32
语种	英语
内容类型	期刊论文
源URL	[http://ir.pku.edu.cn/handle/20.500.11897/342218]
专题	生命科学学院
推荐引用方式 GB/T 7714	Li, Ying-hui,Zhou, Guangyu,Ma, Jianxin,et al. De novo assembly of soybean wild relatives for pan-genome analysis of diversity and agronomic traits[J]. nature biotechnology,2014.
APA	Li, Ying-hui.,Zhou, Guangyu.,Ma, Jianxin.,Jiang, Wenkai.,Jin, Long-guo.,...&Qiu, Li-juan.(2014).De novo assembly of soybean wild relatives for pan-genome analysis of diversity and agronomic traits.nature biotechnology.
MLA	Li, Ying-hui,et al."De novo assembly of soybean wild relatives for pan-genome analysis of diversity and agronomic traits".nature biotechnology (2014).