Genomic resources and comparative analyses of two economical penaeid shrimp species, Marsupenaeus japonicus and Penaeus monodon

doi:10.1016/j.margen.2017.12.006

CORC > 海洋研究所 > 中国科学院海洋研究所 > 实验海洋生物学重点实验室

	Genomic resources and comparative analyses of two economical penaeid shrimp species, Marsupenaeus japonicus and Penaeus monodon
	Yuan, Jianbo 1,2; Zhang, Xiaojun 1,2; Liu, Chengzhang 1; Yu, Yang1 ; Wei, Jiankai3 ; Li, Fuhua 1,2; Xiang, Jianhai1,2
刊名	MARINE GENOMICS
	2018-06-01
卷号	39 页码:22-25
关键词	Penaeid shrimps Genome Assembly Annotation
ISSN号	1874-7787
DOI	10.1016/j.margen.2017.12.006
通讯作者	Zhang, Xiaojun(xjzhang@qdio.ac.cn) ; Xiang, Jianhai(jhxiang@qdio.ac.cn)
英文摘要	Penaeid shrimps are among the most economically important crustaceans, which provide an important global food source. These species exhibit complex body plans and novelties, such as segments and appendages, which render them interesting organisms for developmental biology study of crustaceans. However, limited genomic resources have been put forward for the researches of them. Here, we report the genome sequencing and draft assembly of two economically important penaeid shrimp species, Marsupenaeus japonicus and Penaeus monodon. A total of 132.86 Gb and 132.83 Gb sequencing data was obtained in the two shrimp species. The genome assembly, a total length of 1.94 Gb and 2.04 Gb in M. japonicus and P. monodon, respectively, covers more than 97% of coding regions. We further identified 626 Mb (34.96%) and 833 Mb (46.68%) repeats, 16,716 and 18,100 genes in these two genomes, respectively. We also identified Hox genes that are important to their body plans. These data will provide valuable resources for the study of selective breeding and some plastic biological characters of penaeid shrimps, including molting, lobstering, brooding eggs and sensitization in humans.
资助项目	National Natural Science Foundation of China[41506189] ; National Natural Science Foundation of China[31672632] ; National Natural Science Foundation of China[41376165] ; China Agriculture Research system-48 (CARS-48) ; Scientific and Technological Innovation Project - Qingdao National Laboratory for Marine Science and Technology[2015ASKJ02]
WOS研究方向	Genetics & Heredity ; Marine & Freshwater Biology
语种	英语
出版者	ELSEVIER SCIENCE BV
WOS记录号	WOS:000436207800007
内容类型	期刊论文
源URL	[http://ir.qdio.ac.cn/handle/337002/159490]
专题	海洋研究所_实验海洋生物学重点实验室
通讯作者	Zhang, Xiaojun; Xiang, Jianhai
作者单位	1.Chinese Acad Sci, Inst Oceanol, Key Lab Expt Marine Biol, Qingdao 266071, Peoples R China 2.Qingdao Natl Lab Marine Sci & Technol, Lab Marine Biol & Biotechnol, Qingdao 266071, Peoples R China 3.Ocean Univ China, Coll Marine Life Sci, Minist Educ, Key Lab Marine Genet & Breeding, Qingdao 266003, Peoples R China
推荐引用方式 GB/T 7714	Yuan, Jianbo,Zhang, Xiaojun,Liu, Chengzhang,et al. Genomic resources and comparative analyses of two economical penaeid shrimp species, Marsupenaeus japonicus and Penaeus monodon[J]. MARINE GENOMICS,2018,39:22-25.
APA	Yuan, Jianbo.,Zhang, Xiaojun.,Liu, Chengzhang.,Yu, Yang.,Wei, Jiankai.,...&Xiang, Jianhai.(2018).Genomic resources and comparative analyses of two economical penaeid shrimp species, Marsupenaeus japonicus and Penaeus monodon.MARINE GENOMICS,39,22-25.
MLA	Yuan, Jianbo,et al."Genomic resources and comparative analyses of two economical penaeid shrimp species, Marsupenaeus japonicus and Penaeus monodon".MARINE GENOMICS 39(2018):22-25.