The Grass Carp Genome Database (GCGD): an online platform for genome features and annotations | |
Chen, Yaxin1,2; Shi, Mijuan1; Zhang, Wanting1; Cheng, Yingyin1; Wang, Yaping1; Xia, Xiao-Qin1 | |
刊名 | DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION |
2017-07-27 | |
期号 | 1页码:8 |
ISSN号 | 1758-0463 |
DOI | 10.1093/database/bax051 |
英文摘要 | As one of the four major Chinese carps of important economic value, the grass carp (Ctenopharyngodon idellus) has attracted increasing attention from the scientific community. Recently, the draft genome has been released as a milestone in research of grass carp. In order to facilitate the utilization of these genome data, we developed the grass carp genome database (GCGD). GCGD provides visual presentation of the grass carp genome along with annotations and amino acid sequences of predicted protein-coding genes. Other related genetic and genomic data available in this database include the genetic linkage maps, microsatellite genetic markers (i.e. Short Sequence Repeats, SSRs), and some selected transcriptomic datasets. A series of tools have been integrated into GCGD for visualization, analysis and retrieval of data, e.g. JBrowse for navigation of genome annotations, BLAST for sequence alignment, EC2KEGG for comparison of metabolic pathways, IDConvert for conversion of terms across databases and ReadContigs for extraction of sequences from the grass carp genome. |
资助项目 | Chinese Academy of Sciences[XDA08020201] ; Chinese Academy of Sciences[Y22302] ; National High-Technology Research and Development Program (863 Program)[2011AA100403] ; National Natural Science Foundation of China[31571275] ; 100-talent Program |
WOS关键词 | MODEL ORGANISM DATABASE ; CTENOPHARYNGODON-IDELLUS ; PROVIDES INSIGHTS ; CYPRINUS-CARPIO ; DRAFT GENOME ; COMMON CARP ; SEQUENCE ; INFORMATION ; EXPRESSION ; EVOLUTION |
WOS研究方向 | Mathematical & Computational Biology |
语种 | 英语 |
出版者 | OXFORD UNIV PRESS |
WOS记录号 | WOS:000407487700001 |
资助机构 | Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 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National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National High-Technology Research and Development Program (863 Program) ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program ; 100-talent Program |
内容类型 | 期刊论文 |
源URL | [http://ir.ihb.ac.cn/handle/342005/31410] |
专题 | 水生生物研究所_水生生物分子与细胞生物学研究中心_期刊论文 |
通讯作者 | Xia, Xiao-Qin |
作者单位 | 1.Chinese Acad Sci, Inst Hydrobiol, Wuhan 430072, Peoples R China 2.Univ Chinese Acad Sci, Beijing, Peoples R China |
推荐引用方式 GB/T 7714 | Chen, Yaxin,Shi, Mijuan,Zhang, Wanting,et al. The Grass Carp Genome Database (GCGD): an online platform for genome features and annotations[J]. DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION,2017(1):8. |
APA | Chen, Yaxin,Shi, Mijuan,Zhang, Wanting,Cheng, Yingyin,Wang, Yaping,&Xia, Xiao-Qin.(2017).The Grass Carp Genome Database (GCGD): an online platform for genome features and annotations.DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION(1),8. |
MLA | Chen, Yaxin,et al."The Grass Carp Genome Database (GCGD): an online platform for genome features and annotations".DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION .1(2017):8. |
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