Differential gene expression in the body wall of the sea cucumber (Apostichopus japonicus) under strong lighting and dark conditions

doi:10.1007/s13131-017-1101-4

CORC > 海洋研究所 > 中国科学院海洋研究所 > 海洋生态与环境科学重点实验室

	Differential gene expression in the body wall of the sea cucumber (Apostichopus japonicus) under strong lighting and dark conditions
	Zhang Libin 1,2; Feng Qiming 1,3; Sun Lina 1,2; Fang Yan 4; Xu Dongxue5 ; Zhang Tao1,2 ; Yang Hongsheng1,2
刊名	ACTA OCEANOLOGICA SINICA
	2018-05-01
卷号	37 期号:5 页码:54-66
关键词	sea cucumber Apostichopus japonicus gene expression dark light body wall
ISSN号	0253-505X
DOI	10.1007/s13131-017-1101-4
通讯作者	Yang Hongsheng(hshyang@qdio.ac.cn)
英文摘要	Sea cucumber, Apostichopus japonicus is very sensitive to light changes. It is important to study the influence of light on the molecular response of A. japonicus. In this study, RNA-seq provided a general overview of the gene expression profiles of the body walls of A. japonicus exposed to strong light ("light"), normal light ("control") and fully dark ("dark") environment. In the comparisons of "control" vs. "dark", "control" vs. "light" and "dark" vs. "light", 1 161, 113 and 1 705 differentially expressed genes (DEGs) were identified following the criteria of vertical bar log(2)ratio vertical bar >= 1 and FDR <= 0.001, respectively. Gene ontology analysis showed that "cellular process" and "binding" enriched the most DEGs in the category of "biological process" and "molecular function", while "cell" and "cell part" enriched the most DEGs in the category of "cellular component". And the DEGs were mapped to 214, 41 and 229 pathways in the Kyoto Encyclopedia of Genes and Genomes database, and 51, 2 and 57 pathways were significantly enriched, respectively. Light-specific DEGs identified in this study will be important targets for further investigation to establish the biochemical mechanisms involved in the adaption of this sea cucumber to changes in the level of environmental light.
资助项目	National Natural Science Foundation of China[41676136] ; Strategic Priority Research Program of the Chinese Academy of Sciences[XDA11020703] ; Science and Technology Major Project of Shandong Province (Industry Transformation and Upgrading)[2015ZDZX05002]
WOS研究方向	Oceanography
语种	英语
出版者	SPRINGER
WOS记录号	WOS:000431898900008
内容类型	期刊论文
源URL	[http://ir.qdio.ac.cn/handle/337002/157575]
专题	海洋研究所_海洋生态与环境科学重点实验室
通讯作者	Yang Hongsheng
作者单位	1.Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao 266071, Peoples R China 2.Qingdao Natl Lab Marine Sci & Technol, Lab Marine Ecol & Environm Sci, Qingdao 266071, Peoples R China 3.Univ Chinese Acad Sci, Beijing 100049, Peoples R China 4.Ludong Univ, Sch Agr, Yantai 264025, Peoples R China 5.Qingdao Agr Univ, Coll Marine Sci & Engn, Qingdao 266109, Peoples R China
推荐引用方式 GB/T 7714	Zhang Libin,Feng Qiming,Sun Lina,et al. Differential gene expression in the body wall of the sea cucumber (Apostichopus japonicus) under strong lighting and dark conditions[J]. ACTA OCEANOLOGICA SINICA,2018,37(5):54-66.
APA	Zhang Libin.,Feng Qiming.,Sun Lina.,Fang Yan.,Xu Dongxue.,...&Yang Hongsheng.(2018).Differential gene expression in the body wall of the sea cucumber (Apostichopus japonicus) under strong lighting and dark conditions.ACTA OCEANOLOGICA SINICA,37(5),54-66.
MLA	Zhang Libin,et al."Differential gene expression in the body wall of the sea cucumber (Apostichopus japonicus) under strong lighting and dark conditions".ACTA OCEANOLOGICA SINICA 37.5(2018):54-66.