| Pgaweb: a web server for bacterial pan-genome analysis | |
| Chen, Xinyu1; Zhang, Yadong2,3,4; Zhang, Zhewen2,3; Zhao, Yongbing5; Sun, Chen6; Yang, Ming7; Wang, Jinyue2,3,4; Liu, Qian1,8; Zhang, Baohua1,8; Chen, Meili2,3 | |
| 刊名 | Frontiers in microbiology
 |
| 2018-08-21 | |
| 卷号 | 9页码:8 |
| 关键词 | Web server Bacterial pan-genome analysis Genome dynamics visualization Genome structure interpretation Orthologous gene identification |
| ISSN号 | 1664-302X |
| DOI | 10.3389/fmicb.2018.01910 |
| 通讯作者 | Jin, zhong(zjin@sccas.cn) ; Xiao, jingfa(xiaojngfa@big.ac.cn) |
| 英文摘要 | An astronomical increase in microbial genome data in recent years has led to strong demand for bioinformatic tools for pan-genome analysis within and across species. here, we present pgaweb, a user-friendly, web-based tool for bacterial pan-genome analysis, which is composed of two main pan-genome analysis modules, pgap and pgap-x. pgaweb provides key interactive and customizable functions that include orthologous clustering, pan-genome profiling, sequence variation and evolution analysis, and functional classification. pgaweb presents features of genomic structural dynamics and sequence diversity with different visualization methods that are helpful for intuitively understanding the dynamics and evolution of bacterial genomes. pgaweb has an intuitive interface with one-click setting of parameters and is freely available at http://pgaweb.vlcc.cn/. |
| WOS关键词 | TOOL ; ORTHOLOGS |
| WOS研究方向 | Microbiology |
| WOS类目 | Microbiology |
| 语种 | 英语 |
| 出版者 | FRONTIERS MEDIA SA |
| WOS记录号 | WOS:000442210500001 |
| 内容类型 | 期刊论文 |
| URI标识 | http://www.corc.org.cn/handle/1471x/2374278 |
| 专题 | 计算机网络信息中心 |
| 通讯作者 | Jin, Zhong; Xiao, Jingfa |
| 作者单位 | 1.Chinese Acad Sci, Comp Network Informat Ctr, Beijing, Peoples R China 2.Chinese Acad Sci, BIG Data Ctr, Beijing Inst Genom, Beijing, Peoples R China 3.Chinese Acad Sci, Beijing Inst Genom, CAS Key Lab Genome Sci & Informat, Beijing, Peoples R China 4.Univ Chinese Acad Sci, Coll Life Sci, Beijing, Peoples R China 5.NIAMSD, Lymphocyte Nucl Biol, NIH, Bethesda, MD 20892 USA 6.Penn State Univ, Dept Comp Sci & Engn, University Pk, PA 16802 USA 7.Chinese Acad Sci, Off Gen Affairs, Beijing, Peoples R China 8.Chinese Acad Sci, Ctr Sci Comp Applicat & Res, Beijing, Peoples R China |
| 推荐引用方式 GB/T 7714 | Chen, Xinyu,Zhang, Yadong,Zhang, Zhewen,et al. Pgaweb: a web server for bacterial pan-genome analysis[J]. Frontiers in microbiology,2018,9:8. |
| APA | Chen, Xinyu.,Zhang, Yadong.,Zhang, Zhewen.,Zhao, Yongbing.,Sun, Chen.,...&Xiao, Jingfa.(2018).Pgaweb: a web server for bacterial pan-genome analysis.Frontiers in microbiology,9,8. |
| MLA | Chen, Xinyu,et al."Pgaweb: a web server for bacterial pan-genome analysis".Frontiers in microbiology 9(2018):8. |
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