Characterization of the complete chloroplast genome of Xanthoceras sorbifolium, an endangered oil tree

doi:10.1007/s12686-017-0732-2

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	Characterization of the complete chloroplast genome of Xanthoceras sorbifolium, an endangered oil tree
	Chen, Si-Yun 2; Zhang, Xian-Zhi1
刊名	CONSERVATION GENETICS RESOURCES
	2017-12-01
卷号	9 期号:4 页码:595-598
关键词	Xanthoceras Sorbifolium Chloroplast Genome Phylogenomics Conservation
ISSN号	1877-7252
DOI	10.1007/s12686-017-0732-2
英文摘要	Xanthoceras sorbifolium is an important biodiesel tree in northern China, but its natural population is now very fragmented and in decline. Here we assembled and characterized the complete chloroplast (cp) genome of X. sorbifolium using Illumina pair-end sequencing data. The X. sorbifolium cp genome was 161,231 bp in size, containing a large single copy region (LSC) of 85,299 bp and a small single copy region (SSC) of 18,692 bp separated by a pair of inverted repeats (IRs) of 28,620 bp. The genome had 132 genes, including 86 protein-coding genes, 38 tRNA genes, and 8 rRNA genes. The overall GC content of the X. sorbifolium cp genome was 37.7%, with the corresponding values of LSC, SSC and IR regions being 36.0, 31.7 and 42.3%, respectively. The phylogenomic analysis strongly supported that X. sorbifolium diverged firstly in Sapindaceae. This complete cp genome will be useful for further studies of this endangered plant.
语种	英语
WOS记录号	WOS:000415188400018
内容类型	期刊论文
源URL	[http://ir.kib.ac.cn/handle/151853/60623]
专题	昆明植物研究所_中国西南野生生物种质资源库
作者单位	1.Northwest A&F Univ, Coll Forestry, Yangling 712100, Shaanxi, Peoples R China 2.Chinese Acad Sci, Kunming Inst Bot, Germplasm Bank Wild Species, Kunming 650201, Yunnan, Peoples R China
推荐引用方式 GB/T 7714	Chen, Si-Yun,Zhang, Xian-Zhi. Characterization of the complete chloroplast genome of Xanthoceras sorbifolium, an endangered oil tree[J]. CONSERVATION GENETICS RESOURCES,2017,9(4):595-598.
APA	Chen, Si-Yun,&Zhang, Xian-Zhi.(2017).Characterization of the complete chloroplast genome of Xanthoceras sorbifolium, an endangered oil tree.CONSERVATION GENETICS RESOURCES,9(4),595-598.
MLA	Chen, Si-Yun,et al."Characterization of the complete chloroplast genome of Xanthoceras sorbifolium, an endangered oil tree".CONSERVATION GENETICS RESOURCES 9.4(2017):595-598.