Composition vector approach to whole-genome-based prokaryotic phylogeny: Success and foundations

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	Composition vector approach to whole-genome-based prokaryotic phylogeny: Success and foundations
	Li, Qiang; Xu, Zhao; Hao, Bailin; Hao, BL , Fudan Univ, Dept Phys, T Life Res Ctr, 220 Handan Rd, Shanghai 200433, Peoples R China
刊名	JOURNAL OF BIOTECHNOLOGY
	2010
卷号	149 期号:3 页码:115-119
关键词	Molecular Phylogeny Trees Reconstruction Sequences Evolution Taxonomy
ISSN号	0168-1656
英文摘要	Composition vector approach to prokaryotic phylogeny provides an alignment-free and parameter-free method based on whole-genome data. It has also been applied to viruses and fungi. In all studied cases the inferred phylogenetic relationships agree well with taxonomic knowledge in major groupings and fine branchings. In this review article, after demonstrating its successful application to a collection of 892 genomes including 62 Archaea, 822 Bacteria and 8 Eukarya, we will outline some ongoing work towards the foundations of this new approach. (C) 2009 Elsevier B.V. All rights reserved.
学科主题	Physics
URL标识	查看原文
WOS记录号	WOS:000281985100003
公开日期	2012-08-02
内容类型	期刊论文
源URL	[http://ir.itp.ac.cn/handle/311006/5050]
专题	理论物理研究所_理论物理所1978-2010年知识产出
通讯作者	Hao, BL , Fudan Univ, Dept Phys, T Life Res Ctr, 220 Handan Rd, Shanghai 200433, Peoples R China
推荐引用方式 GB/T 7714	Li, Qiang,Xu, Zhao,Hao, Bailin,et al. Composition vector approach to whole-genome-based prokaryotic phylogeny: Success and foundations[J]. JOURNAL OF BIOTECHNOLOGY,2010,149(3):115-119.
APA	Li, Qiang,Xu, Zhao,Hao, Bailin,&Hao, BL , Fudan Univ, Dept Phys, T Life Res Ctr, 220 Handan Rd, Shanghai 200433, Peoples R China.(2010).Composition vector approach to whole-genome-based prokaryotic phylogeny: Success and foundations.JOURNAL OF BIOTECHNOLOGY,149(3),115-119.
MLA	Li, Qiang,et al."Composition vector approach to whole-genome-based prokaryotic phylogeny: Success and foundations".JOURNAL OF BIOTECHNOLOGY 149.3(2010):115-119.