Genomic expansion of magnetotactic bacteria reveals an early common origin of magnetotaxis with lineage-specific evolution

doi:10.1038/s41396-018-0098-9

CORC > 地质与地球物理研究所 > 中国科学院地质与地球物理研究所 > 中国科学院地球与行星物理重点实验室

	Genomic expansion of magnetotactic bacteria reveals an early common origin of magnetotaxis with lineage-specific evolution
	Lin, Wei 1,2,3; Zhang, Wensi 1,2,3,4; Zhao, Xiang 5; Roberts, Andrew P.5; Paterson, Greig A.1,2,6; Bazylinski, Dennis A.7; Pan, Yongxin 1,2,3,4
刊名	ISME JOURNAL
	2018-06-01
卷号	12 期号:6 页码:1508-1519
ISSN号	1751-7362
DOI	10.1038/s41396-018-0098-9
文献子类	Article
英文摘要	The origin and evolution of magnetoreception, which in diverse prokaryotes and protozoa is known as magnetotaxis and enables these microorganisms to detect Earth's magnetic held for orientation and navigation, is not well understood in evolutionary biology. The only known prokaryotes capable of sensing the geomagnetic held are magnetotactic bacteria (MTB), motile microorganisms that biomineralize intracellular, membrane-bounded magnetic single-domain crystals of either magnetite (Fe3O4) or greigite (Fe3S4) called magnetosomes. Magnetosomes are responsible for magnetotaxis in MTB. Here we report the first large-scale metagenomic survey of MTB from both northern and southern hemispheres combined with 28 genomes from uncultivated MTB. These genomes expand greatly the coverage of MTB in the Proteobacteria, Nitrospirae, and Omnitrophica phyla, and provide the first genomic evidence of MTB belonging to the Zetaproteobacteria and "Candidatus Lambdaproteobacteria" classes. The gene content and organization of magnetosome gene clusters, which are physically grouped genes that encode proteins for magnetosome biosynthesis and organization, are more conserved within phylogenetically similar groups than between different taxonomic lineages. Moreover, the phylogenies of core magnetosome proteins form monophyletic clades. Together, these results suggest a common ancient origin of iron-based (Fe3O4 and Fe3S4) magnetotaxis in the domain Bacteria that underwent lineage-specihc evolution, shedding new light on the origin and evolution of biomineralization and magnetotaxis, and expanding significantly the phylogenomic representation of MTB.
WOS关键词	SINGLE-CELL GENOMICS ; MAGNETOSOME ISLAND ; CANDIDATUS MAGNETOBACTERIUM ; LOIHI SEAMOUNT ; BIOMINERALIZATION ; DIVERSITY ; MAGNETITE ; PROTEIN ; TOOL ; GENES
WOS研究方向	Environmental Sciences & Ecology ; Microbiology
语种	英语
出版者	NATURE PUBLISHING GROUP
WOS记录号	WOS:000432357500010
资助机构	National Natural Science Foundation of China (NSFC)(41330104 ; National Natural Science Foundation of China (NSFC)(41330104 ; National Natural Science Foundation of China (NSFC)(41330104 ; National Natural Science Foundation of China (NSFC)(41330104 ; Youth Innovation Promotion Association of the Chinese Academy of Sciences ; Youth Innovation Promotion Association of the Chinese Academy of Sciences ; Youth Innovation Promotion Association of the Chinese Academy of Sciences ; Youth Innovation Promotion Association of the Chinese Academy of Sciences ; Key Research Program of the Chinese Academy of Sciences(KFZD-SW-219) ; Key Research Program of the Chinese Academy of Sciences(KFZD-SW-219) ; Key Research Program of the Chinese Academy of Sciences(KFZD-SW-219) ; Key Research Program of the Chinese Academy of Sciences(KFZD-SW-219) ; Australian Research Council(DP140104544) ; Australian Research Council(DP140104544) ; Australian Research Council(DP140104544) ; Australian Research Council(DP140104544) ; NSFC(41574063) ; NSFC(41574063) ; NSFC(41574063) ; NSFC(41574063) ; U.S. National Science Foundation (NSF) grant(EAR-1423939) ; U.S. National Science Foundation (NSF) grant(EAR-1423939) ; U.S. National Science Foundation (NSF) grant(EAR-1423939) ; U.S. National Science Foundation (NSF) grant(EAR-1423939) ; 41621004) ; 41621004) ; 41621004) ; 41621004) ; National Natural Science Foundation of China (NSFC)(41330104 ; National Natural Science Foundation of China (NSFC)(41330104 ; National Natural Science Foundation of China (NSFC)(41330104 ; National Natural Science Foundation of China (NSFC)(41330104 ; Youth Innovation Promotion Association of the Chinese Academy of Sciences ; Youth Innovation Promotion Association of the Chinese Academy of Sciences ; Youth Innovation Promotion Association of the Chinese Academy of Sciences ; Youth Innovation Promotion Association of the Chinese Academy of Sciences ; Key Research Program of the Chinese Academy of Sciences(KFZD-SW-219) ; Key Research Program of the Chinese Academy of Sciences(KFZD-SW-219) ; Key Research Program of the Chinese Academy of Sciences(KFZD-SW-219) ; Key Research Program of the Chinese Academy of Sciences(KFZD-SW-219) ; Australian Research Council(DP140104544) ; Australian Research Council(DP140104544) ; Australian Research Council(DP140104544) ; Australian Research Council(DP140104544) ; NSFC(41574063) ; NSFC(41574063) ; NSFC(41574063) ; NSFC(41574063) ; U.S. National Science Foundation (NSF) grant(EAR-1423939) ; U.S. National Science Foundation (NSF) grant(EAR-1423939) ; U.S. National Science Foundation (NSF) grant(EAR-1423939) ; U.S. National Science Foundation (NSF) grant(EAR-1423939) ; 41621004) ; 41621004) ; 41621004) ; 41621004) ; National Natural Science Foundation of China (NSFC)(41330104 ; National Natural Science Foundation of China (NSFC)(41330104 ; National Natural Science Foundation of China (NSFC)(41330104 ; National Natural Science Foundation of China (NSFC)(41330104 ; Youth Innovation Promotion Association of the Chinese Academy of Sciences ; Youth Innovation Promotion Association of the Chinese Academy of Sciences ; Youth Innovation Promotion Association of the Chinese Academy of Sciences ; Youth Innovation Promotion Association of the Chinese Academy of Sciences ; Key Research Program of the Chinese Academy of Sciences(KFZD-SW-219) ; Key Research Program of the Chinese Academy of Sciences(KFZD-SW-219) ; Key Research Program of the Chinese Academy of Sciences(KFZD-SW-219) ; Key Research Program of the Chinese Academy of Sciences(KFZD-SW-219) ; Australian Research Council(DP140104544) ; Australian Research Council(DP140104544) ; Australian Research Council(DP140104544) ; Australian Research Council(DP140104544) ; NSFC(41574063) ; NSFC(41574063) ; NSFC(41574063) ; NSFC(41574063) ; U.S. National Science Foundation (NSF) grant(EAR-1423939) ; U.S. National Science Foundation (NSF) grant(EAR-1423939) ; U.S. National Science Foundation (NSF) grant(EAR-1423939) ; U.S. National Science Foundation (NSF) grant(EAR-1423939) ; 41621004) ; 41621004) ; 41621004) ; 41621004) ; National Natural Science Foundation of China (NSFC)(41330104 ; National Natural Science Foundation of China (NSFC)(41330104 ; National Natural Science Foundation of China (NSFC)(41330104 ; National Natural Science Foundation of China (NSFC)(41330104 ; Youth Innovation Promotion Association of the Chinese Academy of Sciences ; Youth Innovation Promotion Association of the Chinese Academy of Sciences ; Youth Innovation Promotion Association of the Chinese Academy of Sciences ; Youth Innovation Promotion Association of the Chinese Academy of Sciences ; Key Research Program of the Chinese Academy of Sciences(KFZD-SW-219) ; Key Research Program of the Chinese Academy of Sciences(KFZD-SW-219) ; Key Research Program of the Chinese Academy of Sciences(KFZD-SW-219) ; Key Research Program of the Chinese Academy of Sciences(KFZD-SW-219) ; Australian Research Council(DP140104544) ; Australian Research Council(DP140104544) ; Australian Research Council(DP140104544) ; Australian Research Council(DP140104544) ; NSFC(41574063) ; NSFC(41574063) ; NSFC(41574063) ; NSFC(41574063) ; U.S. National Science Foundation (NSF) grant(EAR-1423939) ; U.S. National Science Foundation (NSF) grant(EAR-1423939) ; U.S. National Science Foundation (NSF) grant(EAR-1423939) ; U.S. National Science Foundation (NSF) grant(EAR-1423939) ; 41621004) ; 41621004) ; 41621004) ; 41621004)
内容类型	期刊论文
源URL	[http://ir.iggcas.ac.cn/handle/132A11/88256]
专题	地质与地球物理研究所_中国科学院地球与行星物理重点实验室
通讯作者	Lin, Wei; Pan, Yongxin
作者单位	1.Chinese Acad Sci, Inst Geol & Geophys, Key Lab Earth & Planetary Phys, Beijing 100029, Peoples R China 2.Chinese Acad Sci, Inst Earth Sci, Beijing 100029, Peoples R China 3.Chinese Acad Sci, France China Joint Lab Evolut & Dev Magnetotact M, Beijing 100029, Peoples R China 4.Univ Chinese Acad Sci, Coll Earth Sci, Beijing 100049, Peoples R China 5.Australian Natl Univ, Res Sch Earth Sci, Canberra, ACT 2601, Australia 6.Univ Liverpool, Dept Earth Ocean & Ecol Sci, Liverpool L69 7ZE, Merseyside, England 7.Univ Nevada, Sch Life Sci, Las Vegas, NV 89154 USA
推荐引用方式 GB/T 7714	Lin, Wei,Zhang, Wensi,Zhao, Xiang,et al. Genomic expansion of magnetotactic bacteria reveals an early common origin of magnetotaxis with lineage-specific evolution[J]. ISME JOURNAL,2018,12(6):1508-1519.
APA	Lin, Wei.,Zhang, Wensi.,Zhao, Xiang.,Roberts, Andrew P..,Paterson, Greig A..,...&Pan, Yongxin.(2018).Genomic expansion of magnetotactic bacteria reveals an early common origin of magnetotaxis with lineage-specific evolution.ISME JOURNAL,12(6),1508-1519.
MLA	Lin, Wei,et al."Genomic expansion of magnetotactic bacteria reveals an early common origin of magnetotaxis with lineage-specific evolution".ISME JOURNAL 12.6(2018):1508-1519.