VennPainter: A Tool for the Comparison and Identification of Candidate Genes Based on Venn Diagrams

CORC > 昆明动物研究所 > 昆明动物研究所 > 遗传资源与进化国家重点实验室 > 分子进化基因组学

	VennPainter: A Tool for the Comparison and Identification of Candidate Genes Based on Venn Diagrams
	Lin GL 1,3; Chai J 1,3,4,5; Murphy RW 4,6; Zhou W[]2; Luo J[]1,3; Yuan S 2; Mai C 2; Cai L 2,7
刊名	PLOS ONE
	2016
卷号	4 期号:11 页码:e0154315
通讯作者	zwei@ynu.edu.cn ; jingluo@ynu.edu.cn
合作状况	其它
英文摘要	VennPainter is a program for depicting unique and shared sets of genes lists and generating Venn diagrams, by using the Qt C++ framework. The software produces Classic Venn, Edwards' Venn and Nested Venn diagrams and allows for eight sets in a graph mode and 31 sets in data processing mode only. In comparison, previous programs produce Classic Venn and Edwards' Venn diagrams and allow for a maximum of six sets. The software incorporates user-friendly features and works in Windows, Linux and Mac OS. Its graphical interface does not require a user to have programing skills. Users can modify diagram content for up to eight datasets because of the Scalable Vector Graphics output. VennPainter can provide output results in vertical, horizontal and matrix formats, which facilitates sharing datasets as required for further identification of candidate genes. Users can obtain gene lists from shared sets by clicking the numbers on the diagram. Thus, VennPainter is an easy-to-use, highly efficient, cross-platform and powerful program that provides a more comprehensive tool for identifying candidate genes and visualizing the relationships among genes or gene families in comparative analysis.
收录类别	SCI
资助信息	This research was supported by the National Natural Science Foundation of China (91331105, 31360514 and 61363021), Program for Innovative Research Team (in Science and Technology) in University of Yunnan Province, and the State Key ldesigned the study. The other funders (the last two projects in the above list) had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.aboratory of Genetics, Resources and Evolution, Kunming Institute of Zoology, CAS. The funders JL and WZ (three projects of the National Natural Science Foundation of China) conceived and
语种	英语
内容类型	期刊论文
源URL	[http://159.226.149.26:8080/handle/152453/9762]
专题	昆明动物研究所_分子进化基因组学昆明动物研究所_遗传资源与进化国家重点实验室
作者单位	1.Key Laboratory for Animal Genetic Diversity and Evolution of High Education in Yunnan Province, School of Life Sciences, Yunnan University, Kunming, 650091, China 2.School of Software, Yunnan University, Kunming, 650091, Yunnan, China 3.State Key Laboratory for Conservation and Utilization of Bio-resource, Yunnan University, Kunming, 650091, Yunnan, China 4.State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, The Chinese Academy of Sciences, Kunming, 650223, Yunnan, China 5.Kunming College of Life Science, University of Chinese Academy of Sciences, Kunming, 650000, China 6.Centre for Biodiversity and Conservation Biology, Royal Ontario Museum, Toronto, M5S 2C6, Canada 7.School of Computer and Science, Fudan University, Shanghai, 200433, China
推荐引用方式 GB/T 7714	Lin GL,Chai J,Murphy RW,et al. VennPainter: A Tool for the Comparison and Identification of Candidate Genes Based on Venn Diagrams[J]. PLOS ONE,2016,4(11):e0154315.
APA	Lin GL.,Chai J.,Murphy RW.,Zhou W[].,Luo J[].,...&Cai L.(2016).VennPainter: A Tool for the Comparison and Identification of Candidate Genes Based on Venn Diagrams.PLOS ONE,4(11),e0154315.
MLA	Lin GL,et al."VennPainter: A Tool for the Comparison and Identification of Candidate Genes Based on Venn Diagrams".PLOS ONE 4.11(2016):e0154315.