Saccharina genomes provide novel insight into kelp biology

CORC > 天津工业生物技术研究所 > 工业生物系统工程实验室陈树林 > 期刊论文

	Saccharina genomes provide novel insight into kelp biology
	Ye, Naihao 1; Zhang, Xiaowen 1; Miao, Miao 2,3; Fan, Xiao 1; Zheng, Yi 2,3; Xu, Dong 1; Wang, Jinfeng 2; Zhou, Lin 2,3; Wang, Dongsheng 1; Gao, Yuan 2,3
刊名	NATURE COMMUNICATIONS
	2015-04-01
卷号	6
英文摘要	Seaweeds are essential for marine ecosystems and have immense economic value. Here we present a comprehensive analysis of the draft genome of Saccharina japonica, one of the most economically important seaweeds. The 537-Mb assembled genomic sequence covered 98.5% of the estimated genome, and 18,733 protein-coding genes are predicted and annotated. Gene families related to cell wall synthesis, halogen concentration, development and defence systems were expanded. Functional diversification of the mannuronan C-5-epimerase and haloperoxidase gene families provides insight into the evolutionary adaptation of polysaccharide biosynthesis and iodine antioxidation. Additional sequencing of seven cultivars and nine wild individuals reveal that the genetic diversity within wild populations is greater than among cultivars. All of the cultivars are descendants of a wild Saccharina japonica accession showing limited admixture with Saccharina longissima. This study represents an important advance toward improving yields and economic traits in Saccharina and provides an invaluable resource for plant genome studies.
WOS标题词	Science & Technology
类目[WOS]	Multidisciplinary Sciences
研究领域[WOS]	Science & Technology - Other Topics
关键词[WOS]	ALGA ECTOCARPUS-SILICULOSUS ; DE-NOVO IDENTIFICATION ; LAMINARIA-DIGITATA ; BROWN-ALGAE ; RNA-SEQ ; PHYLOGENETIC ANALYSES ; MANNITOL METABOLISM ; MAXIMUM-LIKELIHOOD ; DEFENSE RESPONSES ; GENE PREDICTION
收录类别	SCI
语种	英语
WOS记录号	WOS:000353705100004
内容类型	期刊论文
源URL	[http://124.16.173.210/handle/834782/1460]
专题	天津工业生物技术研究所_工业生物系统工程实验室陈树林_期刊论文
作者单位	1.Chinese Acad Fishery Sci, Yellow Sea Fisheries Res Inst, Qingdao 266071, Peoples R China 2.Chinese Acad Sci, Beijing Inst Life Sci, Computat Genom Lab, Beijing 100101, Peoples R China 3.Univ Chinese Acad Sci, Coll Life Sci, Beijing 100049, Peoples R China 4.Chinese Acad Sci, Tianjin Inst Ind Biotechnol, Tianjin Key Lab Ind Biosyst & Bioproc Engn, Tianjin 300308, Peoples R China 5.Shandong Univ Technol, Sch Life Sci, Zibo 255049, Peoples R China 6.Fudan Univ, Sch Life Sci, Inst Plant Biol, State Key Lab Genet Engn, Shanghai 200433, Peoples R China 7.Fudan Univ, Sch Life Sci, Inst Plant Biol, Collaborat Innovat Ctr Genet & Dev, Shanghai 200433, Peoples R China
推荐引用方式 GB/T 7714	Ye, Naihao,Zhang, Xiaowen,Miao, Miao,et al. Saccharina genomes provide novel insight into kelp biology[J]. NATURE COMMUNICATIONS,2015,6.
APA	Ye, Naihao.,Zhang, Xiaowen.,Miao, Miao.,Fan, Xiao.,Zheng, Yi.,...&Zhao, Fangqing.(2015).Saccharina genomes provide novel insight into kelp biology.NATURE COMMUNICATIONS,6.
MLA	Ye, Naihao,et al."Saccharina genomes provide novel insight into kelp biology".NATURE COMMUNICATIONS 6(2015).